PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G24080.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 376aa    MW: 40657.9 Da    PI: 7.4041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G24080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.91.9e-53391651128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL +k+++    +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++
  ONIVA02G24080.1  39 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 132
                      79*********************9999666689***************988899**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg+kktLvfy+grap+g kt Wvmheyr+
  ONIVA02G24080.1 133 -GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 165
                      .99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6527188IPR003441NAC domain
PROSITE profilePS5100559.69339188IPR003441NAC domain
PfamPF023653.0E-2940165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRLARRQQQQ QVVVAATMEN DVHHHRQMMQ QQQQQEMDLP PGFRFHPTDE ELITHYLLRK  60
AADPAGFAAR AVGEADLNKC EPWDLPSRAT MGEKEWYFFC VKDRKYPTGL RTNRATESGY  120
WKATGKDREI FRGKALVGMK KTLVFYTGRA PRGGKTGWVM HEYRIHGKHA AANSKQDQEW  180
VLCRVFKKSL ELAPAAAAAV GRRGAGAGTD VGPSSMPMAD DVVGLAPCAL PPLMDVSGGG  240
GGAGTASLSA TAGAAAAPPP AHVTCFSNAL EGQFLDTPYL LPAADPADHL AMSSASPFLE  300
ALQMQYVQDA AAAGGAGMVH ELLMGGGWYF NKGERERLSG ASQDTGLTSS EVNPGEISSS  360
SRQQRMDHHD ASLWAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-55251883165NO APICAL MERISTEM PROTEIN
1ut4_B3e-55251883165NO APICAL MERISTEM PROTEIN
1ut7_A3e-55251883165NO APICAL MERISTEM PROTEIN
1ut7_B3e-55251883165NO APICAL MERISTEM PROTEIN
3swm_A4e-553618817168NAC domain-containing protein 19
3swm_B4e-553618817168NAC domain-containing protein 19
3swm_C4e-553618817168NAC domain-containing protein 19
3swm_D4e-553618817168NAC domain-containing protein 19
3swp_A4e-553618817168NAC domain-containing protein 19
3swp_B4e-553618817168NAC domain-containing protein 19
3swp_C4e-553618817168NAC domain-containing protein 19
3swp_D4e-553618817168NAC domain-containing protein 19
4dul_A3e-55251883165NAC domain-containing protein 19
4dul_B3e-55251883165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347650.0CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623389.10.0NAC domain-containing protein 92 isoform X1
SwissprotQ9FLJ23e-88NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0G8S90.0A0A0E0G8S9_ORYNI; Uncharacterized protein
STRINGONIVA02G24080.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.15e-84NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]