PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G18870.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 265aa    MW: 29925 Da    PI: 8.8459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G18870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-12142183351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  ONIVA02G18870.1 142 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 183
                      79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.269117196IPR001471AP2/ERF domain
PfamPF008472.3E-6141184IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-8141186IPR016177DNA-binding domain
SMARTSM003806.1E-5141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-7144188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMMSRRLFGY SFRRVSVKAD LCLHVTLVGL LSDDTALLRI VLDIAALAIA NVSVKCSGKD  60
SLPVDFPKPS DNENSVEVAH PNIKPFSVHP LPLTKNSDVL LESSNGSDSL KEEKNHYYPG  120
KEIKRRKRHR RKQYVDQEPC IMRGVYFKNM KWQAAIKVDK KQIHLGTVGT QEEAARLYDR  180
AAFMCGREPN FELSEEEKKE LQNYTWKDFL DMTRDTITSK KQRKVGLIRR NKTDSLVGQS  240
DGDTEMINGG GSSHSEDGDA ETSAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-158ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-158ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0E0G6W40.0A0A0E0G6W4_ORYNI; Uncharacterized protein
STRINGONIVA02G18870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-46ERF family protein