PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G06230.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 1003aa MW: 112537 Da PI: 5.9908

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G06230.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.8	2.9e-55	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq ONIVA02G06230.2 20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113 55599*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+yw+Lee++ +ivlvhylevk ONIVA02G06230.2 114 RRSYWMLEEDYMHIVLVHYLEVK 136 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.606	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.2E-76	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-48	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.0E-7	414	499	IPR013783	Immunoglobulin-like fold
CDD	cd00102	0.00335	416	503	No hit	No description
SuperFamily	SSF81296	1.52E-17	416	501	IPR014756	Immunoglobulin E-set
Pfam	PF01833	5.4E-8	416	491	IPR002909	IPT domain
SuperFamily	SSF48403	8.39E-17	605	709	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.2E-18	607	713	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.12E-13	612	706	No hit	No description
PROSITE profile	PS50088	8.763	614	646	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	18.059	614	718	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.013	647	676	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.843	647	679	IPR002110	Ankyrin repeat
SMART	SM00248	1400	686	715	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.51E-8	818	871	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.075	820	842	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	821	850	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0032	822	841	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	843	865	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.578	844	868	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-4	846	865	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKLKFH FLHIYGYDHQ AGKLSSRSTG HDDVLQVSHA DSPLSQLPSQ 180 TTEGESSVSG QASEYDETES GSYQGLQATA PNTGFYSHGQ DNLPVVLNES DLGTAFNGPN 240 SQFDLSLWIE AMKPDKGTHQ IPLYQAPVPS EQSPFTGGPG IESFTFDEVY NNGLSIKDVD 300 GDDTDGETPW QIPNASGTFA TADSFQQNDK TLEEAINYPL LKTQSSSLSD IIKDSFKKND 360 SFTRWMSKEL AEVDDSQITS SSGVYWNSEE ADNIIEASSS DQYTLGPVLA QDQLFTIVDF 420 SPTWTYAGSK TRVFIKGNFL SSDEVKRLKW SCMFGEFEVP AEIIADDTLV CHSPSHKPGR 480 VPFYVTCSNR LACSEVREFD FRPQYMDAPS PLGSTNKIYL QKRLDKLLSV EQDEIQTTLS 540 NPTKEIIDLS KKISSLMMNN DDWSELLKLA DDNEPATDDK QDQFLQNRIK EKLHIWLLHK 600 VGDGGKGPSM LDEEGQGVLH LAAALGYDWA IRPTIAAGVN INFRDAHGWT ALHWAAFCGR 660 ERTVVALIAL GAAPGAVTDP TPSFPSGSTP ADLASANGHK GISGFLAESS LTSHLQTLNL 720 KEAMRSSAGE ISGLPGIVNV ADRSASPLAV EGHQTGSMGD SLGAVRNAAQ AAARIYQVFR 780 MQSFQRKQAV QYEDENGAIS DERAMSLLSA KPSKPAQLDP LHAAATRIQN KFRGWKGRKE 840 FLLIRQRIVK IQAHVRGHQV RKHYRKIIWS VGIVEKVILR WRRRGAGLRG FRPTENAVTE 900 STSSSSGNVT QNRPAENDYD FLQEGRKQTE ERLQKALARV KSMVQYPDAR DQYQRILTVV 960 TKMQESQAMQ EKMLEESTEM DEGLLMSEFK ELWDDDMPTP GYF

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKLKFH FLHIYGYDHQ AGKLSSRSTG HDDVLQVSHA DSPLSQLPSQ  180
TTEGESSVSG QASEYDETES GSYQGLQATA PNTGFYSHGQ DNLPVVLNES DLGTAFNGPN  240
SQFDLSLWIE AMKPDKGTHQ IPLYQAPVPS EQSPFTGGPG IESFTFDEVY NNGLSIKDVD  300
GDDTDGETPW QIPNASGTFA TADSFQQNDK TLEEAINYPL LKTQSSSLSD IIKDSFKKND  360
SFTRWMSKEL AEVDDSQITS SSGVYWNSEE ADNIIEASSS DQYTLGPVLA QDQLFTIVDF  420
SPTWTYAGSK TRVFIKGNFL SSDEVKRLKW SCMFGEFEVP AEIIADDTLV CHSPSHKPGR  480
VPFYVTCSNR LACSEVREFD FRPQYMDAPS PLGSTNKIYL QKRLDKLLSV EQDEIQTTLS  540
NPTKEIIDLS KKISSLMMNN DDWSELLKLA DDNEPATDDK QDQFLQNRIK EKLHIWLLHK  600
VGDGGKGPSM LDEEGQGVLH LAAALGYDWA IRPTIAAGVN INFRDAHGWT ALHWAAFCGR  660
ERTVVALIAL GAAPGAVTDP TPSFPSGSTP ADLASANGHK GISGFLAESS LTSHLQTLNL  720
KEAMRSSAGE ISGLPGIVNV ADRSASPLAV EGHQTGSMGD SLGAVRNAAQ AAARIYQVFR  780
MQSFQRKQAV QYEDENGAIS DERAMSLLSA KPSKPAQLDP LHAAATRIQN KFRGWKGRKE  840
FLLIRQRIVK IQAHVRGHQV RKHYRKIIWS VGIVEKVILR WRRRGAGLRG FRPTENAVTE  900
STSSSSGNVT QNRPAENDYD FLQEGRKQTE ERLQKALARV KSMVQYPDAR DQYQRILTVV  960
TKMQESQAMQ EKMLEESTEM DEGLLMSEFK ELWDDDMPTP GYF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066651	0.0	AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631248.1	0.0	calmodulin-binding transcription activator 1 isoform X1
Refseq	XP_015631249.1	0.0	calmodulin-binding transcription activator 1 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A0E0G278	0.0	A0A0E0G278_ORYNI; Uncharacterized protein
STRING	ONIVA02G06230.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]