PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G05430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 235aa MW: 25798.8 Da PI: 9.4843 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.9 | 1.3e-29 | 33 | 86 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rW +eLH+rFv+av++LGG ++AtPk+i++lm+ kg++++hvkSHLQ+YR ONIVA02G05430.1 33 PRMRWPEELHRRFVHAVRRLGGCHEATPKRIMQLMGAKGVSISHVKSHLQMYRN 86 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-27 | 29 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-14 | 31 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-22 | 33 | 86 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-8 | 34 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGARGRRDRM GSAGGGGGSP PVVVRRYNRS EAPRMRWPEE LHRRFVHAVR RLGGCHEATP 60 KRIMQLMGAK GVSISHVKSH LQMYRNSNNS SNVNRRHPVT PQIDWTTTAQ QDEQQRRQMS 120 SFSFLATRTV PAAGIGSHSH QRPHRRQALH AGDDDGCELT LSISGGAAEE SKDSGSSITD 180 DDDELLIQPP APNIINDDGA TRHGHRHPFA CSTQPPPPAA INLELTISSP CCWLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-14 | 34 | 87 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831400 | 0.0 | CT831400.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624627.1 | 1e-172 | transcription factor HHO5 | ||||
TrEMBL | A0A0E0G1W3 | 1e-174 | A0A0E0G1W3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G05430.1 | 1e-174 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19910 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-20 | G2-like family protein |