PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G48480.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 228aa    MW: 24444.6 Da    PI: 8.9179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G48480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.2e-33211451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp    +++ e yfF+  +++   +g   +ra    g W+a+gk+k v
  ONIVA01G48480.1  21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLARLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEKLV 110
                      699***************************.99***************...346778999998887776258888886443899********** PP

              NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   +++ vg k+tLvf+   ++ g +tdW mheyrl
  ONIVA01G48480.1 111 VAPrcGKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 145
                      *99888999**********...567889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-4515167IPR003441NAC domain
PROSITE profilePS5100544.91121167IPR003441NAC domain
PfamPF023651.0E-2022145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAEAASGGG GGCRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAR  60
LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGKRPV  120
GAKRTLVFFR RGGARTDWAM HEYRLLPADD HPPEANDVWV VCRVFKKTTT LAHRRSPPSI  180
RGAPRRRAAA ADDDDMPSSP SSCVTDGGDA GEEGEESSSC SVVASNCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-271617012168NO APICAL MERISTEM PROTEIN
1ut4_B4e-271617012168NO APICAL MERISTEM PROTEIN
1ut7_A4e-271617012168NO APICAL MERISTEM PROTEIN
1ut7_B4e-271617012168NO APICAL MERISTEM PROTEIN
3swm_A4e-271617015171NAC domain-containing protein 19
3swm_B4e-271617015171NAC domain-containing protein 19
3swm_C4e-271617015171NAC domain-containing protein 19
3swm_D4e-271617015171NAC domain-containing protein 19
3swp_A4e-271617015171NAC domain-containing protein 19
3swp_B4e-271617015171NAC domain-containing protein 19
3swp_C4e-271617015171NAC domain-containing protein 19
3swp_D4e-271617015171NAC domain-containing protein 19
4dul_A4e-271617012168NAC domain-containing protein 19
4dul_B4e-271617012168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674500.0AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBankAK0684460.0AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBankAK2889420.0AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBankCT8295910.0CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBankCT8295920.0CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBankCU4067440.0CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBankGU1203510.0GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627804.11e-162NAC domain-containing protein 83
SwissprotQ9FY933e-38NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0E0FY761e-162A0A0E0FY76_ORYNI; Uncharacterized protein
STRINGONIVA01G48480.11e-163(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-32NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]