PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G48250.3

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 23588.2 Da PI: 10.5335

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G48250.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.1	1.5e-25	62	111	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyeyss ONIVA01G48250.3 62 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 111 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.735	53	113	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.3E-33	53	112	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.04E-38	54	130	No hit	No description
PRINTS	PR00404	1.2E-26	55	75	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.03E-29	55	131	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.5E-25	62	109	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	75	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	90	111	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGAPHARPSI PSSSSPTSPH HHTTTHTHAR LRFPPPTRGG EGGELGFFGA GMARRGRVQL 60 RRIEDKASRQ VRFSKRRAGL FKKAFELALL CDAEVALLVF SPAGKLYEYS SSSIEGTYDR 120 YQQFAGARRD LNEGSTSINS DENASIHSRL RDISAWSLQN NADESDANQL EKLEKLLTNT 180 LRDTKSKKML AKQNGEGSRS RANSSGSRGQ EEGSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3kov_B	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3kov_I	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3kov_J	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3p57_A	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3p57_B	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3p57_C	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3p57_D	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3p57_I	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
3p57_J	1e-18	55	124	2	71	Myocyte-specific enhancer factor 2A
5f28_A	1e-18	55	124	3	72	MEF2C
5f28_B	1e-18	55	124	3	72	MEF2C
5f28_C	1e-18	55	124	3	72	MEF2C
5f28_D	1e-18	55	124	3	72	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834653	0.0	CT834653.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878223.1	1e-109	MADS-box transcription factor 51
Swissprot	Q9XJ61	1e-114	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A0E0FY48	1e-156	A0A0E0FY48_ORYNI; Uncharacterized protein
STRING	OS01T0922800-01	1e-112	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-26	AGAMOUS-like 20

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]