PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G48250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 276aa MW: 30754.4 Da PI: 10.6465 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.5 | 2.3e-25 | 62 | 111 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyeyss ONIVA01G48250.2 62 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 111 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.595 | 53 | 113 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-33 | 53 | 112 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.40E-32 | 54 | 114 | No hit | No description |
PRINTS | PR00404 | 2.1E-26 | 55 | 75 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-25 | 55 | 117 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-25 | 62 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 75 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 90 | 111 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGAPHARPSI PSSSSPTSPH HHTTTHTHAR LRFPPPTRGG EGGELGFFGA GMARRGRVQL 60 RRIEDKASRQ VRFSKRRAGL FKKAFELALL CDAEVALLVF SPAGKLYEYS SSRFYESEGN 120 ELNCFSFTLL YFSVPFRMRF ESRSGLTRFT SFQQLTRSTL VIEGTYDRYQ QFAGARRDLN 180 EGSTSINSDE NASIHSRLRD ISAWSLQNNA DESDANQLEK LEKLLTNTLR DTKSKKMLAK 240 QNGEGSRSRA NSSGSRGQEE GRTVVKVIVG PGPAAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-16 | 55 | 112 | 3 | 60 | MEF2C |
5f28_B | 3e-16 | 55 | 112 | 3 | 60 | MEF2C |
5f28_C | 3e-16 | 55 | 112 | 3 | 60 | MEF2C |
5f28_D | 3e-16 | 55 | 112 | 3 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP012918 | 1e-170 | AP012918.1 Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0158A04, cultivar: Kasalath, complete sequence. | |||
GenBank | CT834653 | 1e-170 | CT834653.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878223.1 | 1e-103 | MADS-box transcription factor 51 | ||||
Swissprot | Q9XJ61 | 1e-101 | MAD51_ORYSJ; MADS-box transcription factor 51 | ||||
TrEMBL | A0A0E0FY47 | 0.0 | A0A0E0FY47_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G48250.1 | 1e-176 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-18 | AGAMOUS-like 20 |
Publications ? help Back to Top | |||
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