PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G40390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 29279.7 Da PI: 5.4391 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.3 | 2.3e-21 | 113 | 174 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S..SST.TEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa..edp.kvveitYegeHnh 58 Dg+ WrKYGqKe++g ++pr YYrC+++ gC ++++v++s+ +dp +++i Y geH++ ONIVA01G40390.1 113 TDGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATRRVQQSQsqDDPaAAFVIAYYGEHTC 174 6***************************9999********87621455257899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-22 | 105 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.903 | 107 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-20 | 108 | 175 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-29 | 112 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-22 | 114 | 174 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAMLGSSSAV VLELMTMGYQ SAAYLGELLR AASPAQAGDE QQELAAEILR CCDRVIAKLN 60 RGGATGATTG KKRKAAESAA AAAVTSPSLP VTPTKRRARG AEAVREVRSG TTTDGFIWRK 120 YGQKEINGCK HPRLYYRCAF RGQGCLATRR VQQSQSQDDP AAAFVIAYYG EHTCGGDAAA 180 CRDGELMPPA VINSGASSFA AAWNMASREP ASSLAVERRS CDGDAPSETS QGWSPSFSSE 240 VELDVVGFDL AGADSSASPV WEFLNGSFDW ESVINSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-14 | 114 | 174 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108657 | 0.0 | AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence. | |||
GenBank | AY870606 | 0.0 | AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621234.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0E0FV26 | 0.0 | A0A0E0FV26_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WWF8 | 0.0 | A2WWF8_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G40390.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8322 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 8e-16 | WRKY DNA-binding protein 46 |