PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G40380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 360aa    MW: 37978.8 Da    PI: 5.242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G40380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.3e-22136197258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnh 58 
                      dDgy+WrKYGqK++++++fprsYYrC+++   +Cp++k+v++ + d  p + +++Y+ eH++
  ONIVA01G40380.1 136 DDGYQWRKYGQKKINNTNFPRSYYRCSYHrerRCPAQKHVQQRDGDdvPALHVVVYTHEHTC 197
                      8***************************99999*******99887645678899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-24121197IPR003657WRKY domain
SuperFamilySSF1182902.48E-21130197IPR003657WRKY domain
SMARTSM007742.7E-31135199IPR003657WRKY domain
PfamPF031063.9E-23136197IPR003657WRKY domain
PROSITE profilePS5081118.326136198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQAQSRLAAA ASGGGGSGIS GSGGISRLGG GAGEEHEAVV RELTRGHELT ARLRAEALRA  60
LRGQGQAEAT ATFILGEVSR AFTVCLSIMA SASPSASPPQ PDETPPADSA VSPPPPRAAR  120
EDNVPRKRLL TASPYDDGYQ WRKYGQKKIN NTNFPRSYYR CSYHRERRCP AQKHVQQRDG  180
DDVPALHVVV YTHEHTCLQG APAELPDAAT NGGAAAAASP DYFPAGGETP SSLRRLRGVG  240
GGGLQPQFVD HRAAMEERER QVLVSSLARV LQGRQCYDDD DDDDTDVASL GAVHARAPAA  300
AAAAPVAASS SSSGPVDAAG EELDVMDYDM TDALFWGPFG TDSNSYDGNL TSTRCFDLIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-15136197968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.10.0probable WRKY transcription factor 4
TrEMBLA0A0E0FV250.0A0A0E0FV25_ORYNI; Uncharacterized protein
STRINGONIVA01G40380.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-17WRKY family protein