PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G40340.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 287aa    MW: 31399.4 Da    PI: 6.2817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G40340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.59.9e-2271131359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp +  +tY+ eH+++
  ONIVA01G40340.1  71 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQENdDDPPLYRVTYTYEHTCN 131
                      9**************************99999*******987516899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2261131IPR003657WRKY domain
SuperFamilySSF1182909.29E-2264132IPR003657WRKY domain
SMARTSM007741.3E-3369132IPR003657WRKY domain
PROSITE profilePS5081115.81271133IPR003657WRKY domain
PfamPF031066.8E-2471130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASPRLKREQ SFDFEEASAQ EAVGSASASY SPPGGGGVFG ISPPESSPRD GRKRRKDRPS  60
LVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR LYYRCSYRED RQCLASKLVQ QENDDDPPLY  120
RVTYTYEHTC NTTPVPTPDV VAEQPPPGAA GDAYLLRFGS SAGGGGGGAH QQQTERERQQ  180
QNTARRRPFM MLSFDSSSSH QLHEQPHAFP PDGQLPATAA AASPSSFTAA EALAAPPPAP  240
PLTTTMNDGG DLFSTWDALR YGLDYDHGHL GNHVYLPDDC NGGDDNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-16711301068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644112.11e-161probable WRKY transcription factor 2
TrEMBLA0A0E0FV220.0A0A0E0FV22_ORYNI; Uncharacterized protein
STRINGONIVA01G40340.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-18WRKY DNA-binding protein 38