PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G40310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 25513.6 Da PI: 6.2753 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 30.6 | 6.7e-10 | 34 | 76 | 20 | 58 |
S-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS WRKY 20 fprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 + YYrCt++ gCp+ k+ve+ +edp ++ ++Y++eH++ ONIVA01G40310.1 34 AMKCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 76 5678******98999*******9852689************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 3.1E-9 | 28 | 78 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-10 | 31 | 77 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-9 | 32 | 78 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-11 | 32 | 76 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.972 | 36 | 79 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVKRSDNMDS SSECSRGAHK RLLQDSRSYD QENAMKCYYR CTYHQDHGCP ASKHVEQHNS 60 EDPPLFRVIY TNEHTCGTSN SASDYMASSM QIQQIADASL RKAQAAERLR KAEVETPRLM 120 HFPPPRCSGG YNMAMKEEKD VIVSSLLTVI RGCHIAESAG NNSAAALPVN RPPPAVARSD 180 HYSCSYAISP ELLPASDDLT LDFMLDSVLD PHWVEPLDLA WLKESTHTG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642042.1 | 1e-163 | probable WRKY transcription factor 64 | ||||
TrEMBL | A0A0E0FV19 | 1e-171 | A0A0E0FV19_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G40310.1 | 1e-172 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11814 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 2e-10 | WRKY DNA-binding protein 38 |