PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G39660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 398aa    MW: 45029.4 Da    PI: 5.2022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G39660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.47.7e-291062433127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                      pG+rF P+d el+ ++L++k++g++l+  + ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++vl+
  ONIVA01G39660.1 106 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVLD 199
                      9***************************999**************9655541556********************66538*************9 PP

              NAM  95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                      +  ++ l+g k  L+++         k +++++ kt W m e+ 
  ONIVA01G39660.1 200 AlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 243
                      9888889**********8887777766899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.251104271IPR003441NAC domain
SuperFamilySSF1019412.22E-37104271IPR003441NAC domain
PfamPF023651.4E-14106243IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAGSAWPE EENLENLEQP LPLLMPSSED HREQQLVPVP  60
WLQQDQDQEW HEQEQFLPLK NQNQEQLQDQ QPLQDQEETR RYLGVPGIRF VPSDIELILD  120
FLRPKLRGEQ LPSYSYMHVC DVYSDHPKEL TSKLGPSREG NWYMFSPRNR KYNKGKRPSR  180
STGQLGFWKS TTKNEAVLDA LSDNMLIGYK ACLTYHEYDE SMPTPKLKKE NAIKTPWKMW  240
EFVCSNSNRP FDAEEEPMRL NDWVLCKVTN KDNKVTTKKF KPQRSKKPKK PKKLQQEEQP  300
QNQGIVIRQP SESGSASSSH QEIPGSSLPG AGGDAAAAAA TAAAVVDPMP LHMIPPSSWN  360
YFSTGVTADG IVMDDSTGVD SYGCVDGAGA LNFQRNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1710627317170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0032600.0AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.10.0protein ATAF2
TrEMBLA0A0E0FUS00.0A0A0E0FUS0_ORYNI; Uncharacterized protein
STRINGONIVA01G39660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-20NAC domain containing protein 47