PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G34070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 319aa    MW: 33067.6 Da    PI: 4.7124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G34070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-3094152259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+
  ONIVA01G34070.1  94 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 152
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.20488154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-3190152IPR003657WRKY domain
SuperFamilySSF1182908.37E-2691152IPR003657WRKY domain
SMARTSM007742.9E-3693153IPR003657WRKY domain
PfamPF031063.6E-2695151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDGEWSDGAA VSSPTMSGGG GREQMKGGED VAAADCPGSP VSPSPAAAQR SAAGAAASPS  60
GRSRRSAQKR VVTVPLADVT GPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS  120
SSKGCPARKQ VERSRNDPDT VIVTYSFEHN HSATVPRAQN RQAAPQKPKA QACSPPEPVV  180
EVEPEETHQY GVTAGPATGA GGGAAAIEVR DEFRWLYDVV SVPASSTSPS DIDAADEMQL  240
YDQPMFFGGA VVGTAALLPD EFGDVGGLGG EGLGEEEALF EGLGELPECA MVFRRRAGDG  300
LAMGGGVKIE QPAESTAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17951511671WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097700.0AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706030.0AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.10.0probable WRKY transcription factor 65
TrEMBLA0A0E0FSP20.0A0A0E0FSP2_ORYNI; Uncharacterized protein
STRINGONIVA01G34070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-37WRKY DNA-binding protein 65