PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA01G28940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 562aa MW: 58550.7 Da PI: 8.6603 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.8 | 4.5e-33 | 352 | 409 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ ONIVA01G28940.1 352 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 409 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-35 | 336 | 411 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 343 | 411 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.535 | 346 | 411 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-39 | 351 | 410 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 352 | 409 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 562 aa Download sequence Send to blast |
MGVAVHWRRA GDPLHMGGEP RARAEAAWAA ALPAALVALV RDTATYTRMM HRLRMETPRG 60 PTCQLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP PASAAVSSRS DGTGQMAAGV 120 TLACAAPPPL RAPRASDGGR RRGVVKGGAG TDTCRSAATA KNHEHGQRRR EAAVDPAMSG 180 EYQFQDELAP LFARPGGGAG EMQMLPSSWF ADYLQAGTPM QMDYDLMCRA LELPVGEDVK 240 REVGVVDVVA AGGGGAPPLT PNTTSSMSTS SSEGVGGGGG GGAGAGAGEE ESPARCKKEE 300 DENKEEGKGE EDEGHKNKKG SAAKGGKAGK GEKRARQPRF AFMTKSEVDH LEDGYRWRKY 360 GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER SYQDPAVVIT TYEGKHTHPI PATLRGSTHL 420 LAAHAQASAA AAAAQQLHHH HGHHGHHGMA PPLPLGSGAA AQFGRSSGID VLSSFLPRAA 480 AAHHGMTTMG GAAATTTTSH GLNSAISGGG GVSSETTSAV TVAASAQPSS PAALQMQHFM 540 AQDLGLLQDM LLPSFIHGTN QP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 342 | 412 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 342 | 412 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY341844 | 0.0 | AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds. | |||
GenBank | AY341855 | 0.0 | AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds. | |||
GenBank | AY870604 | 0.0 | AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640235.1 | 0.0 | uncharacterized protein LOC4326856 isoform X1 | ||||
TrEMBL | A0A0E0FQN1 | 0.0 | A0A0E0FQN1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G28940.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29860.1 | 1e-47 | WRKY DNA-binding protein 71 |