PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G26380.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 380aa MW: 39899 Da PI: 7.0634 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.3e-32 | 206 | 263 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ ONIVA01G26380.2 206 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 263 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-34 | 190 | 265 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-29 | 198 | 265 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 200 | 265 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 205 | 264 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 206 | 263 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MSSGGGGGGG GGDRHGPYHQ HGHLGRGEGA DYVYSSSDME SFFFSQPGGV GIGGGGGGVV 60 GAGGADEIMP YSSITDYLQG LLDPSGLARH LDVACPSSQD TAVKQELSVD VTSHDSQGTG 120 GVAGEGVAQA TPNSSASFSS SDGEAEGGKS SRRCKKGQAK AEEEDDKDEE DAENSKKPNK 180 PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTPKCGVKK 240 RVERSYQDPS TVITTYEGQH THHSPASLRG GGGGVGIVGG HHHHHLFMPG VHGLPPSHLM 300 PAGFHPELMG LMHHHPAMAA AAANPSMYFP GVAASAPPPP AVAGGGAMPP NDHPPLQQHH 360 FTDYALLQDL FPSTMPSSNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 198 | 266 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 198 | 266 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108745 | 0.0 | AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence. | |||
GenBank | AY341856 | 0.0 | AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626307.1 | 0.0 | WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 2e-48 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A0E0FPQ9 | 0.0 | A0A0E0FPQ9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G26380.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 6e-45 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
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