PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G26380.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 380aa    MW: 39899 Da    PI: 7.0634
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G26380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.3e-32206263259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  ONIVA01G26380.1 206 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 263
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-34190265IPR003657WRKY domain
SuperFamilySSF1182907.98E-29198265IPR003657WRKY domain
PROSITE profilePS5081131.066200265IPR003657WRKY domain
SMARTSM007741.6E-37205264IPR003657WRKY domain
PfamPF031062.3E-25206263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSSGGGGGGG GGDRHGPYHQ HGHLGRGEGA DYVYSSSDME SFFFSQPGGV GIGGGGGGVV  60
GAGGADEIMP YSSITDYLQG LLDPSGLARH LDVACPSSQD TAVKQELSVD VTSHDSQGTG  120
GVAGEGVAQA TPNSSASFSS SDGEAEGGKS SRRCKKGQAK AEEEDDKDEE DAENSKKPNK  180
PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTPKCGVKK  240
RVERSYQDPS TVITTYEGQH THHSPASLRG GGGGVGIVGG HHHHHLFMPG VHGLPPSHLM  300
PAGFHPELMG LMHHHPAMAA AAANPSMYFP GVAASAPPPP AVAGGGAMPP NDHPPLQQHH  360
FTDYALLQDL FPSTMPSSNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-291982661078Probable WRKY transcription factor 4
2lex_A5e-291982661078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087450.0AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence.
GenBankAY3418560.0AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626307.10.0WRKY transcription factor 71
SwissprotQ8VWJ22e-48WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0E0FPQ90.0A0A0E0FPQ9_ORYNI; Uncharacterized protein
STRINGONIVA01G26380.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.16e-45WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]