PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G24520.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 463aa    MW: 49499.3 Da    PI: 6.6312
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G24520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.1e-12129185155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  ONIVA01G24520.1 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185
                      57*******************5444.2455536655.779999**************98 PP
2AP247.35e-15228279155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +   g +k  +lg+f t eeAa+a++ a+ k++g
  ONIVA01G24520.1 228 SIYRGVTRHHQHGRWQARIGSVA--G-NKDLYLGTFSTQEEAAEAYDIAAIKFRG 279
                      57****************88853..2.5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-15129194IPR016177DNA-binding domain
CDDcd000181.75E-17129195No hitNo description
PfamPF008473.2E-9129185IPR001471AP2/ERF domain
SMARTSM003801.4E-21130199IPR001471AP2/ERF domain
PROSITE profilePS5103217.477130193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12130194IPR001471AP2/ERF domain
PRINTSPR003671.8E-6131142IPR001471AP2/ERF domain
CDDcd000184.76E-23228289No hitNo description
PfamPF008474.1E-10228279IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-18228289IPR016177DNA-binding domain
SMARTSM003803.3E-33229293IPR001471AP2/ERF domain
PROSITE profilePS5103219.098229287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18229288IPR001471AP2/ERF domain
PRINTSPR003671.8E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAL STTSAPPLGE EGPAEGAPKM EDFLGGLGGG  60
GGAVAAAPAA APEDQLSCGE LGSIAAGFLR RYPAPENAGG VTIAMATDAA AELADPARRT  120
AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVANYETE LEEMKSMTRQ EFVLSLRRKS SDFSRGASIY RGVTRHHQHG  240
RWQARIGSVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVDSILNSD  300
LPVGGGAATR ASKFPSDPSL PLPSPAMPPS EKDYWSLLAL HYHHQQQQQQ FPASAFDTYG  360
CSSGVNVDFT MGTSSHSGSN SNSSSSSAIW GTAAGAAMGR QQNGGSSNRQ SNSYSGNNIS  420
YAAAAAMASG SALYGGSTGS NGTWVASNTS TAPHFYNYLF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641575.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-124AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0E0FP260.0A0A0E0FP26_ORYNI; Uncharacterized protein
STRINGONIVA01G24520.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-114AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]