PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G16940.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 554aa    MW: 59200.1 Da    PI: 4.6468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G16940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.6e-25391751127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgk 88 
                      +p+G+ F P+d el    L+ k+ +++    l++v+++++i++++P  L+ + + +ee+  +yfFs+r+ +++  +++r++r++k g+Wka+g 
  ONIVA01G16940.1  39 MPVGCYFVPKDLELFAI-LRCKLVRSQlpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKarNKRRPTRVAKGGTWKASGG 131
                      699************66.6666555552334456799************8445555555356999999855443389999**9*********** PP

              NAM  89 dkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      +k++ sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  ONIVA01G16940.1 132 SKTLRSKkvGGIDVGQKLTMVFYerrFEGDQNPIKTNWGMHEFT 175
                      ****998888899**********43313456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3233199IPR003441NAC domain
PROSITE profilePS5100530.34539196IPR003441NAC domain
PfamPF023652.2E-1340175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MAEQPLGGGG GGGGDGNNNG KWKGKEKVVP EYGKNRHGMP VGCYFVPKDL ELFAILRCKL  60
VRSQLPGALN NVFEHIRILE FHPALLHETY IGNEEDGYIY FFSRRQFATK ARNKRRPTRV  120
AKGGTWKASG GSKTLRSKKV GGIDVGQKLT MVFYERRFEG DQNPIKTNWG MHEFTKIIDG  180
SKNQLEDLAV YRLYKIKRKE DEEPVNAAAA ASSTDEPSTS SALPPPTPPR PLPDMAGPSS  240
ATPLLPLQLP GLAGSSSAMS LPVPLQLPGL AGSSSAMSLP AQQMPGMAGS SSAMPLPLSL  300
PGLAGGMMSM ADQANMASTS QASTPSSELL QDWYDEFEIT YGAVAPPSPS TISWEEPQSS  360
PTGWWPSPNG EPVQHDGYLG MAANPTSYML EHPLPTAAIP PEPMTPPTSS PAPPPAVDNH  420
HRLSPPHDAA GSNYNHPELA GYNGGVQAQH EHQHQPQEPQ PALLVDGEDG YGAIADGDGD  480
TQLGVAELDT ERIAEMVNHI MDGEFEFKFE DNTVLKYNEV FPDDDKVVAA PMMIDGGGDG  540
DGADGGDGGD PFDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661070.0AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence.
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0FL970.0A0A0E0FL97_ORYNI; Uncharacterized protein
STRINGONIVA01G16940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-13NAC family protein