PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G12610.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 495aa    MW: 55460 Da    PI: 5.1649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G12610.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.8e-51151421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGf FhP+d el+++yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++
  ONIVA01G12610.3  15 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTKDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 107
                      79****************************.99***************5346667999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++++g+kktLvf++gr p+g++t+W+mhey +
  ONIVA01G12610.3 108 KM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 142
                      *9.99*****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-595165IPR003441NAC domain
PROSITE profilePS5100555.5715165IPR003441NAC domain
PfamPF023651.1E-2416141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLGIWTMESL RDMVLPPGFG FHPKDTELIS HYLKKKIHGQ KIEYEIIPEV DIYKHEPWDL  60
PAKCDVPTKD NKWHFFAARD RKYPNGSRSN RATVAGYWKS TGKDRAIKMG KQTIGTKKTL  120
VFHEGRPPTG RRTEWIMHEY YIDERECQAC PDMKDAYVLC RITKRNDWIP GNGNELDNSD  180
PHPEPYDAPP SVISTEQLNL AAEPVVGVEA APVTVAEPDG VTTSAITANI PSPSDDINLD  240
DWLNELFDPF FDPEQSLASA DLSPDEQNVE SSNVGALAPK VEQDYSSPNE NVVDDTEYLL  300
PEDVYNILHP GTDDFNMLQN PLDQYPIQYA TDVWSGIQKE ELWSPQANAE PSQSNEAADN  360
GIIRRYRSMK TPETSVPQFK GKTQAKMRVG INKMATSSSE SINQTIKFEN SGRLVEHQKN  420
QAHYVASTKR SDAGKPSTEL SSNRGFLRGI RNAFAGCSDA RWNMILVAGF AIGVAVVALH  480
IGQRLGLSQR DQQHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-441216812172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308860.0CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0E0FJN70.0A0A0E0FJN7_ORYNI; Uncharacterized protein
STRINGONIVA01G12610.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]