PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G12610.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 536aa MW: 59708.8 Da PI: 6.1693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G12610.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.6e-51	56	183	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf FhP+d el+++yLkkk++g+k+e e+i+evdiyk+ePwdLp+ v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++ ONIVA01G12610.2 56 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTKDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 148 79**************************.99***********5346667999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLvf++gr p+g++t+W+mhey + ONIVA01G12610.2 149 KM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 183 9.99****************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-59	46	206	IPR003441	NAC domain
PROSITE profile	PS51005	55.57	56	206	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	57	182	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MASMANQHPP QRRARASSGV PAARARGGRG CTGEPSRRAA LILPIWTMES LRDMVLPPGF 60 GFHPKDTELI SHYLKKKIHG QKIEYEIIPE VDIYKHEPWD LPAKCDVPTK DNKWHFFAAR 120 DRKYPNGSRS NRATVAGYWK STGKDRAIKM GKQTIGTKKT LVFHEGRPPT GRRTEWIMHE 180 YYIDERECQA CPDMKDAYVL CRITKRNDWI PGNGNELDNS DPHPEPYDAP PSVISTEQLN 240 LAAEPVVGVE AAPVTVAEPD GVTTSAITAN IPSPSDDINL DDWLNELFDP FFDPEQSLAS 300 ADLSPDEQNV ESSNVGALAP KVEQDYSSPN ENVVDDTEYL LPEDVYNILH PGTDDFNMLQ 360 NPLDQYPIQY ATDVWSGIQK EELWSPQANA EPSQSNEAAD NGIIRRYRSM KTPETSVPQF 420 KGKTQAKMRV GINKMATSSS ESINQTIKFE NSGRLVEHQK NQAHYVASTK RSDAGKPSTE 480 LSSNRGFLRG IRNAFAGCSD ARWNMILVAG FAIGVAVVAL HIGQRLGLSQ RDQQHT

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MASMANQHPP QRRARASSGV PAARARGGRG CTGEPSRRAA LILPIWTMES LRDMVLPPGF  60
GFHPKDTELI SHYLKKKIHG QKIEYEIIPE VDIYKHEPWD LPAKCDVPTK DNKWHFFAAR  120
DRKYPNGSRS NRATVAGYWK STGKDRAIKM GKQTIGTKKT LVFHEGRPPT GRRTEWIMHE  180
YYIDERECQA CPDMKDAYVL CRITKRNDWI PGNGNELDNS DPHPEPYDAP PSVISTEQLN  240
LAAEPVVGVE AAPVTVAEPD GVTTSAITAN IPSPSDDINL DDWLNELFDP FFDPEQSLAS  300
ADLSPDEQNV ESSNVGALAP KVEQDYSSPN ENVVDDTEYL LPEDVYNILH PGTDDFNMLQ  360
NPLDQYPIQY ATDVWSGIQK EELWSPQANA EPSQSNEAAD NGIIRRYRSM KTPETSVPQF  420
KGKTQAKMRV GINKMATSSS ESINQTIKFE NSGRLVEHQK NQAHYVASTK RSDAGKPSTE  480
LSSNRGFLRG IRNAFAGCSD ARWNMILVAG FAIGVAVVAL HIGQRLGLSQ RDQQHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-44	53	209	12	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT830886	0.0	CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649784.1	0.0	NAC domain-containing protein 74
Swissprot	Q7GCL7	0.0	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A0E0FJN6	0.0	A0A0E0FJN6_ORYNI; Uncharacterized protein
STRING	ONIVA01G12610.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	2e-66	NAC domain containing protein 86

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]