PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G12610.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 501aa    MW: 55788.6 Da    PI: 7.2033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G12610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.14.9e-51561831128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGf FhP+d el+++yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++
  ONIVA01G12610.1  56 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTKDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 148
                      79****************************.99***************5346667999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++++g+kktLvf++gr p+g++t+W+mhey +
  ONIVA01G12610.1 149 KM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 183
                      *9.99*****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5946206IPR003441NAC domain
PROSITE profilePS5100555.5756206IPR003441NAC domain
PfamPF023651.1E-2457182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MASMANQHPP QRRARASSGV PAARARGGRG CTGEPSRRAA LILPIWTMES LRDMVLPPGF  60
GFHPKDTELI SHYLKKKIHG QKIEYEIIPE VDIYKHEPWD LPAKCDVPTK DNKWHFFAAR  120
DRKYPNGSRS NRATVAGYWK STGKDRAIKM GKQTIGTKKT LVFHEGRPPT GRRTEWIMHE  180
YYIDERECQA CPDMKDAYVL CRITKRNDWI PGNGNELDNS DPHPEPYDAP PSVISTEQLN  240
LAAEPVVGVE AAPVTVAEPD GSLASADLSP DEQNVESSNV GALAPKVEQD YSSPNENVVD  300
DTEYLLPEDV YNILHPGTDD FNMLQNPLDQ YPIQYATDVW SGIQKEELWS PQANAEPSQS  360
NEAADNGIIR RYRSMKTPET SVPQFKGKTQ AKMRVGINKM ATSSSESINQ TIKFENSGRL  420
VEHQKNQAHY VASTKRSDAG KPSTELSSNR GFLRGIRNAF AGCSDARWNM ILVAGFAIGV  480
AVVALHIGQR LGLSQRDQQH T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-455320912172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281870.0AB028187.1 Oryza sativa mRNA for OsNAC8 protein, complete cds.
GenBankAK0622590.0AK062259.1 Oryza sativa Japonica Group cDNA clone:001-047-G11, full insert sequence.
GenBankAK1028080.0AK102808.1 Oryza sativa Japonica Group cDNA clone:J033108J08, full insert sequence.
GenBankCT8308860.0CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.
GenBankGU1203470.0GU120347.1 Oryza sativa Japonica Group clone KCS602B05 NAC8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0E0FJN50.0A0A0E0FJN5_ORYNI; Uncharacterized protein
STRINGONIVA01G12610.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]