PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06360.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 217aa    MW: 22510 Da    PI: 7.5561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.9e-30104162159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K vk+s++pr+YYrC+ agC vkk+ver+ +dp++v++tY g Hnh 
  ONIVA01G06360.1 104 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAGCGVKKRVERDGDDPRYVVTTYDGVHNHA 162
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-3191164IPR003657WRKY domain
SuperFamilySSF1182903.66E-2796164IPR003657WRKY domain
PROSITE profilePS5081131.08999164IPR003657WRKY domain
SMARTSM007741.3E-33104163IPR003657WRKY domain
PfamPF031061.8E-23105161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAASLGLCHE TSYAYSYPAS NTSSSLCFPP LMADHIVDGG GGCSFGEFLE LGHSVYSLPL  60
PPPPSQPVVV AGGNNDQYGV SSSSAAAATT SRIGFRTRSE VEVLDDGFKW RKYGKKAVKS  120
SPNPRNYYRC SAAGCGVKKR VERDGDDPRY VVTTYDGVHN HATPGCVGGG GHLPYPTSAA  180
PAWSVPPAAA SPPPAHAQAW GAPLHAAAAA HSSESSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2694164777Probable WRKY transcription factor 4
2lex_A1e-2694164777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024860.0AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418540.0AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633261.11e-109probable WRKY transcription factor 50
TrEMBLA0A0E0FHB51e-156A0A0E0FHB5_ORYNI; Uncharacterized protein
STRINGONIVA01G06360.11e-157(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-38WRKY DNA-binding protein 50