PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G05270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 442aa    MW: 49050.9 Da    PI: 7.8469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G05270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15195244154
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      s+y+GVr++  +g+W+AeIrd +     r  r ++g+f ++eeAa+a+ a  ++++
  ONIVA01G05270.1 195 SKYRGVRRRA-WGKWAAEIRDpV-----RkSRKWIGTFNSEEEAAAAYLAQSNQFH 244
                      89*****777.**********44.....55******************88766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.34E-14195228No hitNo description
SuperFamilySSF541712.94E-16195248IPR016177DNA-binding domain
PfamPF008471.7E-9195238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-20196238IPR001471AP2/ERF domain
SMARTSM003803.3E-14196250IPR001471AP2/ERF domain
PROSITE profilePS5103218.65196253IPR001471AP2/ERF domain
PRINTSPR003672.6E-8197208IPR001471AP2/ERF domain
PRINTSPR003672.6E-8219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSPSPSLVHI TRFASLLRSS SSFSLLRFAS KSPAISPPKT SPPPTTTINK PLLLLLFFLL  60
RLAISPPPPP HSLTSCHVIR AIDRVVASAA FAANGFFLLP SHPPPSKLVY EGRKNTAKSL  120
HDLQMMVPSS RKVRVFCSDP DATDSSDEDD QNKKERRFSR EILIPMENSK ASKPVKTLVQ  180
CGTKTVKDSE KEPTSKYRGV RRRAWGKWAA EIRDPVRKSR KWIGTFNSEE EAAAAYLAQS  240
NQFHEELMAL KIQSSVSEQE DLSSSVTISC VSSSQSCDQK IQAKPQEHKR VSVVVNRETV  300
EQKFKAQPQA QKIKAQPEVQ KRVSVKISHE TEDEHLLNLP STPKGKEISM GAVLGRIDEI  360
PVSNCVGHID EFPPDDFTRL ADAFPVSDFI GMADVPLGDD YIGLADISHL PLPITDLKFD  420
LNAELNWDGF DFASLEQELN CL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8311650.0CT831165.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI221K24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651273.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651274.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651275.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651276.10.0ethylene-responsive transcription factor ERF117
TrEMBLA0A0E0FGX90.0A0A0E0FGX9_ORYNI; Uncharacterized protein
STRINGONIVA01G05270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.15e-17ERF family protein