PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 37176.4 Da PI: 6.4456 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.7 | 5.6e-50 | 24 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL k++++ ++++ vi+evdiyk++Pw+Lp + + +++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ ONIVA01G00250.1 24 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPI 116 79***************************9.89***************5334455666************************************ PP NAM 93 lskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 +++++ g+kk Lvfy+gr pkg+kt+W+mheyrl ONIVA01G00250.1 117 SISETQQtvlLGVKKALVFYRGRPPKGTKTSWIMHEYRL 155 99844444559**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-60 | 18 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.117 | 24 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-26 | 25 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MMTIDLQLPA AACGDHHTAA GAGLPPGFRF HPTDEELLLH YLGKRAAAAP CPAPVIAEVD 60 IYKYNPWELP AMAVFGESDG EWYFFSPRDR KYPNGVRPNR AAGSGYWKAT GTDKPISISE 120 TQQTVLLGVK KALVFYRGRP PKGTKTSWIM HEYRLANAAS SSSSYTSNMK QLASSSSSSS 180 SSASMRLDEW VLCRIYKKKE ANQQLQHYID MMMDDDNDDE HNLQVQQQAQ SHRMPRPPSI 240 SDYLLDYSDD LPPSTDQTPS LHLGFTAVNE GNNKRHKTME EYYSISISTA DMLHASSSTS 300 NNKSTQINFS SIFEPQTPAA AGHQLMSSHN DDTSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-66 | 24 | 204 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-66 | 24 | 204 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-66 | 24 | 204 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-66 | 24 | 204 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-66 | 24 | 204 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-66 | 24 | 204 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-66 | 24 | 204 | 17 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002818 | 0.0 | AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621004.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | A2YMR0 | 4e-79 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | A0A0E0FEZ3 | 0.0 | A0A0E0FEZ3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G00250.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 5e-71 | NAC domain containing protein 47 |