PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G13360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25010.5 Da PI: 12.284 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.8 | 3e-14 | 27 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ grWv ++ +g + r ++g+f+taee a+a++aa+++l g OMERI12G13360.1 27 PVFRGVRRRGCAGRWV-----FRGaRGaRGDRLWVGTFDTAEETARAHDAAMLALCG 78 579*************.....999999888***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 27 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-20 | 28 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-13 | 28 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.147 | 28 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-13 | 28 | 88 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.8E-5 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.25E-22 | 29 | 88 | No hit | No description |
PRINTS | PR00367 | 9.8E-5 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MTSSATATPA SPKRSAGRTK FHEMRHPVFR GVRRRGCAGR WVFRGARGAR GDRLWVGTFD 60 TAEETARAHD AAMLALCGAS ASLNFTDSAW LLHILRAPVV SGLRPPAARR AARRQQGRRR 120 VLAPGEYRHC HCHLRRCCID RSSVGTHEFN DRFNPRIIKI SSLSATIHDN TPPFQQARTP 180 LPSSSMSPLM TRSAPLTSSH ASSSSMLATS VRPLNRLATS SHLSPPSQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:15656983}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 1e-137 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AF243384 | 1e-137 | AF243384.1 Oryza sativa CRT/DRE binding factor (CBF) mRNA, complete cds. | |||
GenBank | AP002536 | 1e-137 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 1e-137 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY345235 | 1e-137 | AY345235.1 Oryza sativa transcription factor RCBF4 mRNA, complete cds. | |||
GenBank | AY502052 | 1e-137 | AY502052.1 Oryza sativa (indica cultivar-group) CRT/DRE binding protein gene, complete cds. | |||
GenBank | AY607691 | 1e-137 | AY607691.1 Oryza sativa (japonica cultivar-group) cold-induced CBF/DREB transcription factor mRNA, complete cds. | |||
GenBank | AY785895 | 1e-137 | AY785895.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1D (DREB1D) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q6J1A5 | 1e-59 | DRE1D_ORYSJ; Dehydration-responsive element-binding protein 1D | ||||
Swissprot | Q6REU5 | 1e-59 | DRE1D_ORYSI; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0E0FE52 | 1e-162 | A0A0E0FE52_9ORYZ; Uncharacterized protein | ||||
STRING | OS06T0165600-01 | 4e-58 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 2e-26 | dehydration response element B1A |
Publications ? help Back to Top | |||
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