PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G12740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 21370.2 Da PI: 7.623 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 24 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 +++G++++k +grW AeIrd + k r ++g+f+taeeAa a++a +++l+g OMERI12G12740.1 24 RFHGIHRRK-SGRWSAEIRD----NmiKGSRSWVGTFDTAEEAAWAYDAVARRLYG 74 689***999.7*********....77455************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.3E-26 | 24 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-10 | 24 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.296 | 24 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-20 | 24 | 83 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.67E-20 | 24 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-25 | 24 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEEVEYRSDK GGRRRPAASK KQHRFHGIHR RKSGRWSAEI RDNMIKGSRS WVGTFDTAEE 60 AAWAYDAVAR RLYGPNARTN FPLPPPPPVA PLLPAPAVAN KKMNSKRKKP AVAAEMVGGP 120 AGGEPAAGEM APVLLGNALE ATNGWEFEPY SCMGLVVGGA VYNYADEPEP ADDELQLLHL 180 HGGAMVDFAA DGCLWSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 9 | 82 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB510479 | 0.0 | AB510479.1 Oryza sativa Indica Group Snorkel 2 gene for Ethylene response factor, complete cds, cultivar: C9285. | |||
GenBank | AB510481 | 0.0 | AB510481.1 Oryza sativa Indica Group Snorkel 2 gene for Ethylene response factor, complete cds, cultivar: Bhadua. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664718.2 | 1e-34 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
TrEMBL | A0A0E0FDW4 | 1e-142 | A0A0E0FDW4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G12760.1 | 1e-136 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15615 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 9e-11 | ERF family protein |