PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 358aa    MW: 40897.3 Da    PI: 7.7592
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15481301399
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +r+++p kfa++++g  ++   l l+ +s  +W++ +  +k  g+ +l++GW +F+ka++Lke+D + F+ +g+ + ++ v +f++
  OMERI12G12190.1  48 ANRISIPEKFAKDFNGHITK--GLNLKASSCGTWRIGI--EKVTGELFLKSGWDNFAKAHELKENDLLFFTCNGEGSCSFDVLIFDA 130
                      4689*********9777444..5***************..*******************************9988665578888876 PP
2B342.79.8e-14252348198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++vl   +v+++++l++p   a++h +   +++  l +++ + ++W vk+ + ++ +++     W +F ++n+L+eg +++F+l++  ++ ++
  OMERI12G12190.1 252 FVTVLRAGHVHRKNILIIPSGLAANHlD-R-KSHEILLIRSNRKEKWYVKHYHANTTRGFNCH-RWFKFIDENRLREGYVCIFELMKGaKRPTM 342
                      788899999**************99943.3.3445677788999*******777777776655.8*******************9987799999 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      +v+v+ 
  OMERI12G12190.1 343 TVHVIG 348
                      999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1832133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.15336131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-1838133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-1338129No hitNo description
SMARTSM010191.3E-439131IPR003340B3 DNA binding domain
PfamPF023623.1E-1249130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-17245348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-17246348IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-13250345No hitNo description
SMARTSM010197.8E-8252350IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166252350IPR003340B3 DNA binding domain
PfamPF023621.3E-11252348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKFADKNAGE VMGEKGCESC SKWQEHYYRE HIDVSRICFF RLMTGDFANR ISIPEKFAKD  60
FNGHITKGLN LKASSCGTWR IGIEKVTGEL FLKSGWDNFA KAHELKENDL LFFTCNGEGS  120
CSFDVLIFDA SGCEKVPGVL TGKKDSHMCK HFSNVGGQND EHYILIDSED TSTPSYPVGS  180
HKASTSKNTN GKTKTNPSKE RGNVKKEMIE EEESDDDEHV DYYYSRFANY LTCEERDEIF  240
SLVSLQPGNP VFVTVLRAGH VHRKNILIIP SGLAANHLDR KSHEILLIRS NRKEKWYVKH  300
YHANTTRGFN CHRWFKFIDE NRLREGYVCI FELMKGAKRP TMTVHVIGKI DNQFVLLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619308.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40090-like
SwissprotQ2QMT21e-175Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0E0FDN00.0A0A0E0FDN0_9ORYZ; Uncharacterized protein
STRINGOMERI12G12130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-25B3 family protein