PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1674aa    MW: 190554 Da    PI: 9.2696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14591331898
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +p kfa+ + g+   s  ++le ++g++++v++   k +++ vl++GW  F+++ +Lk+ D++vF+++g+s+f  +v++f+
  OMERI12G12160.1  59 VPTKFANIIRGQ--ISEVVKLEVPNGKTYDVQV--AKEQNELVLRSGWGAFARDYELKQCDILVFTYSGSSRF--KVRIFN 133
                      799999666766..6779***************..*********************************99999..999987 PP
2B349.57.5e-161832631298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        + +++pk fa++ +g+   s   +le ++gr+++v++   k  ++ v+++GW+ F++a +L++gD++vF ++g+s f  +v++f+
  OMERI12G12160.1 183 LDKPVTIPKMFAKNVQGQ--ISGVAKLEVPDGRTYDVEI--AKEHNELVFRSGWEVFASAYELEQGDILVFAYSGNSHF--KVQIFN 263
                      555689******888888..6669***************..**********************************9999..999987 PP
3B354.81.7e-17370461199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+++ +  k   l +pkkf+++  gk   + +++le ++g+ ++v++  +  +++ vl++GW +F++  +Lk gD +vF ++g+s f  +v
  OMERI12G12160.1 370 FFKVMMSVSDIKDE-LAIPKKFTANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWANFASTYQLKHGDLLVFIHSGHSHF--KV 456
                      99***999999987.********888666..3446***************..********************************999999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f+ 
  OMERI12G12160.1 457 LIFDP 461
                      99885 PP
4B335.61.6e-115876661292
                      HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      +sg lv++k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  OMERI12G12160.1 587 ASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 666
                      45679**********888..4558888887777*******..8888888*************************8876444444 PP
5B342.11.5e-13728826199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++v+ +s+ ++++ l+++ k+a+++     e++ ++l+  e+  + +  l+++ + + + l kGW +Fv++n+L++ D+++F+l+++ ++ ++
  OMERI12G12160.1 728 FLSVMRSSNCTRQSSLCFSVKYASKYLPH--EDQNMRLRLpETKYKCKAALRVDTSTNLHKLLKGWGKFVNDNKLEVHDICLFQLMKNkKKLTM 819
                      7889999999999*************533..3446777773455788888877999999***************************999***** PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++rk
  OMERI12G12160.1 820 TVHIIRK 826
                      ****997 PP
6B357.23e-18866953197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF  +g+s f  +v
  OMERI12G12160.1 866 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIQSGNSHF--KV 950
                      67777..6678887.********9999994..559***************..*******************************8888888..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  OMERI12G12160.1 951 WIY 953
                      665 PP
7B340.25.9e-1310821163893
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3    8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                       + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l ++  +++y l++GW +F + n+L+egD++vF+ ++++++  v
  OMERI12G12160.1 1082 KASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSLTWDIGLDIDT-DDQYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 1163
                       55677899***********888767..56665537889******4333.346*************************8887666..3 PP
8B337.54.1e-12124013201394
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
               B3   13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94  
                       s+ ++++ k+a+++  + e++ +++   +  +s++ k  ++ + + + l++GW +Fv++n+Lk gD+++F+l+++ ++ +++v
  OMERI12G12160.1 1240 SRYMCFSAKYAAKYL-PRENN-KIMRLRLPKKSYKYKAVFKINNKVHKLGGGWGKFVDDNKLKLGDICLFQLMKDkKKLTMMV 1320
                       556788889999993.33334.455555566777777777999999***************************9867776666 PP
9B342.89.5e-14135814341494
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                       + +++p k ae ++g+ ++     l+++sg++W+v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +g+ ++++ +
  OMERI12G12160.1 1358 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGI--EKVADELILMSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 1434
                       459*******777777555..59999***********..*******************************77665554443 PP
10B344.43e-1415671663197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                       f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y +++ +++     W +F ++n+L+eg +++F+l++  ++
  OMERI12G12160.1 1567 FVAVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 1655
                       7889999*******************544..45567776636779******8865555555544.8*******************9976688 PP

                       E..EEEEE CS
               B3   90 felvvkvf 97  
                        +++v+v+
  OMERI12G12160.1 1656 PTMTVHVI 1663
                       88888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1823137IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-655135IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1855137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.29359135IPR003340B3 DNA binding domain
PfamPF023629.3E-1259133IPR003340B3 DNA binding domain
CDDcd100177.69E-1759133No hitNo description
PROSITE profilePS5086312.224172265IPR003340B3 DNA binding domain
SMARTSM010198.3E-9173265IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-19175267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-18176267IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-13182263IPR003340B3 DNA binding domain
CDDcd100178.87E-17188263No hitNo description
SuperFamilySSF1019361.55E-20363462IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-21365462IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-17368460No hitNo description
PROSITE profilePS5086312.76369462IPR003340B3 DNA binding domain
PfamPF023626.0E-15370460IPR003340B3 DNA binding domain
SMARTSM010191.2E-10370462IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-13570673IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-14571674IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124576674IPR003340B3 DNA binding domain
SMARTSM010193.7E-4578674IPR003340B3 DNA binding domain
PfamPF023629.1E-9587666IPR003340B3 DNA binding domain
CDDcd100171.05E-9588672No hitNo description
Gene3DG3DSA:2.40.330.107.0E-17720827IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19721829IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-15726825No hitNo description
PfamPF023622.9E-12728826IPR003340B3 DNA binding domain
SMARTSM010197.5E-8728827IPR003340B3 DNA binding domain
PROSITE profilePS508639.601728827IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-21860958IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-21862958IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084863956IPR003340B3 DNA binding domain
CDDcd100171.91E-19864954No hitNo description
PfamPF023623.5E-16866952IPR003340B3 DNA binding domain
SMARTSM010191.4E-15866956IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-1510691167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-1610691168IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11110751170IPR003340B3 DNA binding domain
SMARTSM010194.4E-510751173IPR003340B3 DNA binding domain
PfamPF023621.0E-910831162IPR003340B3 DNA binding domain
CDDcd100174.25E-1010901155No hitNo description
Gene3DG3DSA:2.40.330.109.7E-1612191325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-1712201326IPR015300DNA-binding pseudobarrel domain
CDDcd100174.04E-1512251320No hitNo description
SMARTSM010190.001512271324IPR003340B3 DNA binding domain
PROSITE profilePS5086310.16512281324IPR003340B3 DNA binding domain
PfamPF023623.1E-1012391320IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-1713411444IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.16713451442IPR003340B3 DNA binding domain
CDDcd100172.90E-1313471440No hitNo description
Gene3DG3DSA:2.40.330.103.3E-1613481444IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-713481442IPR003340B3 DNA binding domain
PfamPF023625.4E-1113571432IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1715601665IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-2015611661IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-1715651661No hitNo description
PfamPF023623.9E-1215671663IPR003340B3 DNA binding domain
SMARTSM010196.0E-1015671667IPR003340B3 DNA binding domain
PROSITE profilePS5086313.15515671666IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1674 aa     Download sequence    Send to blast
MRKSFTTCKE CIFYHYWNHM GDQKRSFINV MIGDFVPNAL HEVHSKLDVG LIWLFLQAVP  60
TKFANIIRGQ ISEVVKLEVP NGKTYDVQVA KEQNELVLRS GWGAFARDYE LKQCDILVFT  120
YSGSSRFKVR IFNPSGCEKE LSCVMMNSTP CGHEGSMPYH DNHVQSPSER SSQHATVLPP  180
VLLDKPVTIP KMFAKNVQGQ ISGVAKLEVP DGRTYDVEIA KEHNELVFRS GWEVFASAYE  240
LEQGDILVFA YSGNSHFKVQ IFNPSNCEKE LSCVMMNRSI SDDNHRQSPS WESLVPASRR  300
RRSPPACRLT APLPASQHAA YLQAAPPPAT AVRINVALKF IIVMNKSGTT CMDCITNHYW  360
LHMDDRERYF FKVMMSVSDI KDELAIPKKF TANVRGKIPE QVRLEVSDGK MYNVQVTEEQ  420
DELVLRSGWA NFASTYQLKH GDLLVFIHSG HSHFKVLIFD PSYTEKEFSC VVTDSTSHVH  480
ERSISHDNHL QSPRSVILGK NYSLCSSRKR SRMNPADYPS QRPDVPSSED IKDPMSSGGL  540
QKSKKSCYVL PMLYSMTSAQ EAEVLALEKK IQPQIPLYIT AMDISVASGS LVFSKDYAVR  600
YLLDQNRTIK LCQSGGSKTW DISLDMDTDD LYALSTGWLD FFRGNLLQEG DICVFEASKS  660
KRGVALTFHP FKESHCPKSS EYTLSTKSPT RRVPKRDYFA TNLTNLTDQQ ERKVKNKIKS  720
IQSDIPIFLS VMRSSNCTRQ SSLCFSVKYA SKYLPHEDQN MRLRLPETKY KCKAALRVDT  780
STNLHKLLKG WGKFVNDNKL EVHDICLFQL MKNKKKLTMT VHIIRKGECS GSLCCRCCGM  840
EKSHRVCKNC VANHYWLHMD NHGKSFIKVM ITDFKNGVTI PAKFARNFGG QMSGTVKLET  900
RNGKTYEVQV AKELNNLVLR SGWERFASAY ELEKGDILVF IQSGNSHFKV WIYDPSACEK  960
ELPCIITEQL PRVQQRSISH DNHTRLKRNA KSAKLYVDSS GHTKETSEIN PASSPSWKPT  1020
ERVPFSEELD EPVDLANVQK ATKSFYSLPR MCNLTSAQKA EVDALEKRIK PQIPFYITVI  1080
DKASATDGLL AISKDYAVSY LLDKNETIKL CHSGRSLTWD IGLDIDTDDQ YALSTGWLDF  1140
IRNNHLQEGD ICVFEASKNK RGVALIFHPL KQSHHPKPPG CVPSTKFPRH GVSKPNYIVS  1200
RFTTLSGQLK IKVEAKVQAI QSEVPIFVAV MRESFIRGRS RYMCFSAKYA AKYLPRENNK  1260
IMRLRLPKKS YKYKAVFKIN NKVHKLGGGW GKFVDDNKLK LGDICLFQLM KDKKKLTMMV  1320
MGEKGCESCR KWQEHYYKEH MDVSRIRFFR LMTGDFAHGI SIPEKVAEIF SGQITKGFNL  1380
KSPSGETWRV GIEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGHGNG SCSFDVLIFD  1440
ASGCEKVSCF FTGKKNSYMC KNFNSIGGQI AGKYLSSDSE DTSTPSVLIG SPHKASTSKK  1500
LSGKTKTNPR KEPEDPNCSH WHVIEEKNTD DDEHADYHYT RFANYLTGEE RDEIFSLVSL  1560
QPGNPVFVAV LQTAHVRRRN ILIVPTRFAA DHLERKSHDI LLIRPNRKQK WSVKYYYLSN  1620
TTRGFNCHRW IKFIRENRLR EGNVCIFELM KGARRPTMTV HVICKADNRF VLLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0FDM30.0A0A0E0FDM3_9ORYZ; Uncharacterized protein
STRINGOMERI12G12100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-27B3 family protein