PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI12G09680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 616aa MW: 64655.8 Da PI: 6.447 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 218 | 239 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg OMERI12G09680.1 218 PCPEFKKGAGCRRGDMCEYAHG 239 8******88************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.26E-8 | 50 | 134 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.116 | 52 | 123 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 7.1E-9 | 53 | 133 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.805 | 88 | 123 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.8E-4 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 216 | 240 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 218 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 87 | 249 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.841 | 249 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MGEPAGAEAA VSARLLELAA DDNAAGLGEL LAAWPSLADE PAPWYTPARG AEPLTPLMVA 60 AAYGSVACLD ALLSPPYLVD PNRASASSLS APLHLAAAGG SASAPAAVSR LLAAGADPTL 120 LDHLQRRASD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK 180 VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV 240 FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPDELRPLYV STGSAVPSPR GALEMAAAAM 300 GMGLSSPGSS SFTPPLSPSA GGGGGGGGGG GAWPQQPSVP ALCLPGSAGN LHLSRLRTSL 360 SARDMAVDEL LAAAAAAADY DGLVGSPASI RSARGKALVP SNLDELFSAE LSAAAASRSP 420 RYADQGGAAF SPTRKAAVLN QFQQQQHQQQ SLLSPRAATV TPEPVSPMSS RLLAALAQRE 480 KMQQQTLRSM SSRDLGNAAS LLVGSPVSSS MSKWGFPSGN PDWGADDEEL GRLKRCSSFE 540 LRSGAANGNH EPDLSWVNTL VKEPTPEKMM TTTSAMDSIG ILGQNTSRDH IVGGEDDTAG 600 VISSWLEQLQ LDEMVV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL713900 | 0.0 | AL713900.4 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620786.1 | 0.0 | zinc finger CCCH domain-containing protein 67 | ||||
Swissprot | Q2QPW2 | 0.0 | C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A0E0FCL4 | 0.0 | A0A0E0FCL4_9ORYZ; Uncharacterized protein | ||||
STRING | OS12T0515500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-135 | CCCH-type zinc finger protein with ARM repeat domain |