PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G06600.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 383aa    MW: 40888.8 Da    PI: 7.7498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G06600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-116993327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C++++rtG C++G +CkF+H+p
  OMERI12G06600.1 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93
                     789********************97 PP
2zf-CCCH39.11.3e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OMERI12G06600.1 114 QPECQYYLKTGTCKFGATCKFHHPR 138
                      799********************96 PP
3zf-CCCH39.87.6e-13249274227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OMERI12G06600.1 249 DQPECQFYMKTGDCKFGAVCKFHHPK 274
                      689*********************96 PP
4zf-CCCH37.83.3e-12294320127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  OMERI12G06600.1 294 PGEPVCTFYSRYGICKFGPNCKFDHPM 320
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816694IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-86993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-47292IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5117139IPR000571Zinc finger, CCCH-type
SMARTSM0035639145169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.117145166IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511247275IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6250277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5253275IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99293321IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4298318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAAGAGAGGG GGEGGSNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALANRNEKE CAYYLRTGQC KFASTCYAQV IVPQGLVQVP  180
GWNPYAAQMG SSSPDDQQRT PVTTQYYGSR QSETGGMGDH GMYQSYQGGS VPVGVYTVQG  240
ENIFPERPDQ PECQFYMKTG DCKFGAVCKF HHPKERLVPA PNCALNSLGL PLRPGEPVCT  300
FYSRYGICKF GPNCKFDHPM GTLMYGSATS PRGDVSSMHY QLSPSPGHPG ILLDGGSGRS  360
HRVPQSDSQQ IPSGDGNAER EAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0E0FBH70.0A0A0E0FBH7_9ORYZ; Uncharacterized protein
STRINGORUFI12G10410.10.0(Oryza rufipogon)
STRINGOS12T0405100-010.0(Oryza sativa)
STRINGORGLA12G0088700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-125zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]