PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI12G06090.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 508aa MW: 55076.8 Da PI: 7.0211

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI12G06090.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.4e-09	109	134	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ OMERI12G06090.3 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP
2	zf-CCCH	25.9	1.7e-08	219	241	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H OMERI12G06090.3 219 QEECKYYSTPGGCKFGKACKYLH 241 699******************** PP
3	zf-CCCH	34.6	3.1e-11	266	290	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ OMERI12G06090.3 266 GEKECPYYMRTGSCKYATNCKFHHP 290 7899********************9 PP
4	zf-CCCH	19.9	1.3e-06	413	439	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ OMERI12G06090.3 413 PGQPECQHFVKSGFCKFRMKCKYHHPR 439 5789*********************96 PP
5	zf-CCCH	23.8	7.9e-08	458	483	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ OMERI12G06090.3 458 DQPVCTYYGRYGVCKFGPACAYNHPF 483 6899********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0013	108	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.258	108	136	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-6	110	134	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-5	113	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.103	216	244	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.3E-4	217	243	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-6	219	241	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-4	222	242	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.793	264	292	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-5	264	291	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-8	266	290	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-6	267	291	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	270	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.028	412	439	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.676	412	440	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0081	456	483	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.732	456	484	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-5	457	484	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	458	483	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MADADARAPP KSDPGATPIG SISPSSAAPA AAVEDEVEVE VEVEEQLAGL AIADQGEELL 60 LPKPTGWEDG PVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQGF ADKGSASNLE 180 NFKKYSYEII DVKKGRMEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL 240 HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP 300 QLEHENGDTP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP 360 EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH 420 FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN 480 HPFNFSPVPA AGPPLLPAQY PTPGNYTL

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MADADARAPP KSDPGATPIG SISPSSAAPA AAVEDEVEVE VEVEEQLAGL AIADQGEELL  60
LPKPTGWEDG PVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQGF ADKGSASNLE  180
NFKKYSYEII DVKKGRMEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL  240
HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP  300
QLEHENGDTP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP  360
EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH  420
FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN  480
HPFNFSPVPA AGPPLLPAQY PTPGNYTL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111498	0.0	AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
GenBank	AK121774	0.0	AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620302.1	0.0	zinc finger CCCH domain-containing protein 65 isoform X3
Swissprot	Q2QTY2	0.0	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A0E0FBA2	0.0	A0A0E0FBA2_9ORYZ; Uncharacterized protein
STRING	OPUNC12G07750.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-63	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]