PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G04560.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 390aa    MW: 41356.3 Da    PI: 7.3902
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G04560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.91.6e-21293355163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  OMERI12G04560.1 293 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 355
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.6E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-39142267No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-17287352No hitNo description
PfamPF001701.5E-20293355IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21293357IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415295358IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-11296352No hitNo description
CDDcd147024.59E-24298349No hitNo description
PROSITE patternPS000360300315IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGSSGADAPT KTSKASAPQE QQPPASSSAA TPAVYPDWAN FQGYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTPYAMA SPNGNADPTG  120
TTTTAAAAAA GETDGKSSEG KEKSPIKRSK GSLGSLNMIT GKNSTEHGKT SGASANGAIS  180
QSGESGSESS SEGSEANSQN DSHHKESGQE QDGEVRSSQN GVSRSPSQAK LNQTMAIMPM  240
PSSGPVPAPT TNLNIGMDYW ANTASSTPAI HGKATPTAAP GSMVPGEQWV QDERELKRQR  300
RKQSNRESAR RSRLRKQAEC EELAQRAEVL KQENASLRDE VNRIRKEYDE LLSKNSSLKE  360
KLEDKQHKTD EAGVDNKLQH SGDDSQKKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309315RRSRLRK
2309316RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619718.10.0bZIP transcription factor 68 isoform X2
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A0E0FAQ20.0A0A0E0FAQ2_9ORYZ; Uncharacterized protein
STRINGOGLUM12G08090.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-88basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]