PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G02100.8
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 407aa    MW: 46172.3 Da    PI: 6.8765
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G02100.8genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix827.9e-2692187185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d
  OMERI12G02100.8  92 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 185
                      7*********************9877778889999**********************************************5499999999988 PP

         trihelix  84 ql 85 
                       +
  OMERI12G02100.8 186 CM 187
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-2090214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHHHRQHAKN  60
GMSDDEEHGV NEDATDSQSG KGKKGAAWQR MKWTDSMVKL LITAVSYTGE DPGADSGAGK  120
RNSAIMQKKG KWKAISKVMG ERGCSVSPQQ CEDKFNDLNK RYKRLTDILG RGTACKIVEN  180
HALLDCMSNL SDKMKDDARK ILSSKHLFYE EMCSYHNNNR VSLPEDPALQ RSLQLALRCK  240
DEHDLRRGTS GDADEDDQSV DSDSKEENDE EHYTLQGDKS ALPMHKRLRH MTDQEDVGFG  300
NSSSSHGCSR RSDSHGISLD INKAFPDGTN LALAQKDLAT QSADLEEQRL QIEVQAVYLA  360
KQRLKWERFS KNKDRELEQM RLENEKMRLE NKRLELEYRV PGLKAIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031220.0AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
GenBankAL7139360.0AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619923.10.0trihelix transcription factor GT-3a
TrEMBLA0A0E0F9S20.0A0A0E0F9S2_9ORYZ; Uncharacterized protein
STRINGOMERI12G02090.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-100sequence-specific DNA binding transcription factors