PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G01050.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 687aa    MW: 73541.5 Da    PI: 6.048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G01050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM552.9e-175026209127
              NAM   9 PtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      P+ e+l+++yL + ++gk+++ +e  i ++d+y +eP+dL  k     +   e+   +fF++ ++++ ++++k+r++ +g+W  + + kev++k
  OMERI12G01050.1 502 PSAEDLITFYLPRLIAGKPTKDTEKfICRADVYGSEPSDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQNS-KEVKNK 592
                      999****************6654544**************843454222..255588**************************8866.899997 PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                       g +vg  +   f   ++++g+ tdW+m+e +
  OMERI12G01050.1 593 AGVKVGETQ--NFR--SKKDGRYTDWLMEEHH 620
                      777777665..555..678999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534746.42E-1470189IPR029058Alpha/Beta hydrolase fold
PfamPF078591.1E-1873196IPR013094Alpha/beta hydrolase fold-3
Gene3DG3DSA:3.40.50.18201.2E-2079184IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.94E-43188502IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.1E-62219502IPR029058Alpha/Beta hydrolase fold
PfamPF078595.4E-47264497IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF1019411.2E-18489641IPR003441NAC domain
PROSITE profilePS5100518.948494641IPR003441NAC domain
PfamPF023651.1E-7501620IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFMVLVPPY  60
DDPRDGLDVA GIVPVVLPLA PEHRLPAAID TGHAALLWLR DVACGASDTI VHPAVERLRG  120
AADFSRVFLI GDSAGGVLVH NVAARAGEAG AEALDPIRIA GGVLLHPGFI LPEKSPSELE  180
NPPTANPTTT TRTLVESVTN WIRVYSDGSV DRLGPPEAAA FMVLVPPYDD PRDGVTVHDV  240
ATDHGVDVRL YLTTTAPARR RPVLVHFHGG GFCLSHAAWS LYHRFYARLA VDLDVAGIVS  300
VVLPLAPEHR LPAAIDAGHA ALLWLRDVAS GGSDTIAHPA VERLLDAADF SRVFLIGDSA  360
GGVLVHNVAA RAGEAGAEAL DPIRLAGGVL LHPGFILPEK SPSELENPPT PFMTQETVDK  420
FVMLALPVGT TSRDHPYTSP AAAVTAAEGA SLPPMLVMVA EEDMLRDAQV EYGEAMARAG  480
KAVETVVSHG RGIGHVFYLN CPSAEDLITF YLPRLIAGKP TKDTEKFICR ADVYGSEPSD  540
LAGKFAPVPR CEKGGRFFFT SCKRHKGSST KKERTAGAGT WVRQNSKEVK NKAGVKVGET  600
QNFRSKKDGR YTDWLMEEHH CCRQQAVAGD EEPVICRMYV SPRAPPDSAA RQESAAFVQQ  660
QPAPQVSEPP CDKKKRDDVA EEAPAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A2e-2723552153332CXE carboxylesterase
2o7v_A2e-2723552153332CXE carboxylesterase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0611240.0AK061124.1 Oryza sativa Japonica Group cDNA clone:006-207-G09, full insert sequence.
GenBankAK1010300.0AK101030.1 Oryza sativa Japonica Group cDNA clone:J023150J02, full insert sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005040.0BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.10.0probable carboxylesterase 17
TrEMBLA0A0E0F9B10.0A0A0E0F9B1_9ORYZ; Uncharacterized protein
STRINGOMERI12G01020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-10NAC domain containing protein 90