PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G00120.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 342aa    MW: 38060.2 Da    PI: 5.77
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G00120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY741.9e-23145206259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  OMERI12G00120.1 145 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQEdNNDPPMFQVTYSNEHTCT 206
                      8***************************99999*******9862579*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-24137206IPR003657WRKY domain
SuperFamilySSF1182909.81E-22139206IPR003657WRKY domain
SMARTSM007744.9E-34144207IPR003657WRKY domain
PfamPF031063.3E-25145205IPR003657WRKY domain
PROSITE profilePS5081117.373145208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAVTESVCLS EEQQAVAVRE VAQVYELIKT QQPLLFVHQQ PQQLAHGLLN HAMRALNVAL  60
SVMNQPHASS SSSSSAAAAA AGHHFPVMTM IKAESTPANS SATPAADVSD NHVAGKARRS  120
SPAKRRRINC EDKSSWVNRT VVPHEDGYQW RKYGEKKIQG THFTRSYFRC TYRDDRGCQA  180
TKQIQQEDNN DPPMFQVTYS NEHTCTTTRL INNTNNNPAA LHSLTANPNG HPDDDSDDTV  240
FTKMIKQEQQ AAWLPPPPPP PHDLTTISNN FDETPGLHVC QEVPPSSSNS SVMSHYADEF  300
DHHQMLETTV MEEALGLGAD LDDPYFYDPN LLLIYESLMN CY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13138205168OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX8422440.0BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLA0A0E0F8Y40.0A0A0E0F8Y4_9ORYZ; Uncharacterized protein
STRINGOMERI12G00130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-17WRKY family protein