PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G12090.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 301aa    MW: 33184.1 Da    PI: 8.6122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G12090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.58.4e-30251508128
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                      hPt+ elv +yL  ++ + +l+  e+i +v+i++++Pwd+   +++++ek  yfF++++ k   ++r+nr+t++g+W++ g++k+v+ +  +  
  OMERI11G12090.1  25 HPTEGELVFHYLYCRAVNMPLPS-EFICDVNILRHNPWDIVpGALTEREKGKYFFMQKEIKCLGSRRSNRITSKGFWRSAGSEKPVYYSqgG-- 115
                      9*******************999.89**************54788889999************************************98551.. PP

              NAM  99 l.....vglkktLvfykgrapkgektdWvmheyrl 128
                            vg+++tL+fy g+++++e+t+W m+e+ l
  OMERI11G12090.1 116 GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFCL 150
                      234566***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-3316160IPR003441NAC domain
PROSITE profilePS5100530.86718219IPR003441NAC domain
PfamPF023651.1E-1425149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MARVVLSTLI VNGATMHLPA VGMSHPTEGE LVFHYLYCRA VNMPLPSEFI CDVNILRHNP  60
WDIVPGALTE REKGKYFFMQ KEIKCLGSRR SNRITSKGFW RSAGSEKPVY YSQGGGSDCM  120
LVGMRRTLTF YFGNSRTAER TKWGMQEFCL AGNGLSPYPV MKHAIGDGSK PPCNCAETTI  180
AKRNDGLSAV LRNVLTITPL VETVVEPDGS WLICRIYRTR QRALPVITPP AIENAREIII  240
PPANGNAREG QVRFIDFLRK GSHIESSSPC RCIVGPSLVE GSDESAGSVD QKDCERNGGS  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-171415011140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-112NAC transcription factor 25
TrEMBLA0A0E0F6200.0A0A0E0F620_9ORYZ; Uncharacterized protein
STRINGOMERI11G11780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-25NAC domain containing protein 83