PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G11960.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 305aa    MW: 35056.6 Da    PI: 8.7802
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G11960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033108130223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C ++++++ +L  Hi+  H
  OMERI11G11960.2 108 SCSVCWRVYPTSRLLSIHISEaH 130
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.180105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082105IPR007087Zinc finger, C2H2
SMARTSM003557.4107130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109130IPR007087Zinc finger, C2H2
SMARTSM003550.29145170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQQKPAAEAM EEEVKGEAVG RRRPGLGFWL AARRRLAPDD PFFAAGDMER ELLAKQVALD  60
LSEDERYQLE RMEVASANAL LCPISGCGAH LDCLENFEDH YRTRHTASCS VCWRVYPTSR  120
LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK  180
KARPSQRQRN KNQKQWQAVH KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH  240
SCKEAKNNEM EVDKQVDELA SAVSRLSTAD STPSSISFGH RRSRGLAFVP RSIRQNKQCM  300
EFKFE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607020.0AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615475.10.0zinc finger protein 511 isoform X2
TrEMBLA0A0E0F6050.0A0A0E0F605_9ORYZ; Uncharacterized protein
STRINGOMERI11G11670.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-90zinc ion binding;nucleic acid binding;zinc ion binding