PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G11960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 331aa MW: 37734.6 Da PI: 9.3781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 108 | 130 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++++++ +L Hi+ H OMERI11G11960.1 108 SCSVCWRVYPTSRLLSIHISEaH 130 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 4.1 | 80 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 82 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.4 | 107 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 109 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.29 | 145 | 170 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 147 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQQKPAAEAM EEEVKGEAVG RRRPGLGFWL AARRRLAPDD PFFAAGDMER ELLAKQVALD 60 LSEDERYQLE RMEVASANAL LCPISGCGAH LDCLENFEDH YRTRHTASCS VCWRVYPTSR 120 LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK 180 KARPSQRQRN KNQKQWQAVH KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH 240 SCKEAKNNEM EVDKQVDELA SAVSRLSTAD STPSSISFGH RRSRGLAFVP RSIRQNKQVK 300 VLTLNEGSCY GFPRTFLAKL SPFGPNRNNL G |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060702 | 0.0 | AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615475.1 | 0.0 | zinc finger protein 511 isoform X2 | ||||
TrEMBL | A0A0E0F604 | 0.0 | A0A0E0F604_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI11G11670.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10911 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 5e-90 | zinc ion binding;nucleic acid binding;zinc ion binding |