PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G11000.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 403aa    MW: 44341.2 Da    PI: 8.9422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G11000.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57e-111841326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  OMERI11G11000.5 18 EPDCSYYMRTGLCRFGMTCKFNHP 41
                     789********************8 PP
2zf-CCCH391.4e-126387327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C+++++tGtCk+G++CkF+H++
  OMERI11G11000.5 63 QPECQYYLKTGTCKFGATCKFHHPR 87
                     799********************96 PP
3zf-CCCH36.86.8e-12109133327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OMERI11G11000.5 109 EKECAYYLRTGQCKFGSTCKFHHPQ 133
                      679********************97 PP
4zf-CCCH39.78.1e-13270295227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OMERI11G11000.5 270 DQPECQFYMKTGDCKFGAVCKFHHPK 295
                      689*********************96 PP
5zf-CCCH38.61.8e-12315341127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OMERI11G11000.5 315 PGEPICTFYSRYGICKFGPNCKFDHPM 341
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8681543IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-41542IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-81841IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-52043IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-42142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2446088IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-66087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66389IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-106387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-56688IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6106134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619106134IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5106133IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511268296IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5268295IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4274295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7314341IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10316341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4319339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNLGEAMEAG PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PADRKMAVAA ARMKGEYPQR  60
IGQPECQYYL KTGTCKFGAT CKFHHPREKA AMATRVQLNA LGYPLRPNEK ECAYYLRTGQ  120
CKFGSTCKFH HPQPSNTMVA VRGSVYSPGQ SVTSPSQHTY PGAVTNWPLS RSASFIASPR  180
WPGHSSYAQV IVPPGLVQVP GWNPYAAQIG SSSSDDQQRT AGGAKYYTGS RHSETPNMGD  240
QGMFSSYQAG SVPLGLYTVQ RESIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERIIP  300
TPNCALSSLG LPLRPGEPIC TFYSRYGICK FGPNCKFDHP MGTVMYGLPT SPTGDVSARR  360
MLAPVPAHSE VSPDNVSGRS RRITHSDSQQ IPSGERGTER EAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0F5M60.0A0A0E0F5M6_9ORYZ; Uncharacterized protein
STRINGOMERI11G10690.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]