PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G11000.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 443aa    MW: 47979.1 Da    PI: 8.5949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G11000.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.9e-115881326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  OMERI11G11000.4 58 EPDCSYYMRTGLCRFGMTCKFNHP 81
                     789********************8 PP
2zf-CCCH38.81.5e-12103127327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OMERI11G11000.4 103 QPECQYYLKTGTCKFGATCKFHHPR 127
                      799********************96 PP
3zf-CCCH36.67.6e-12149173327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OMERI11G11000.4 149 EKECAYYLRTGQCKFGSTCKFHHPQ 173
                      679********************97 PP
4zf-CCCH39.59.1e-13310335227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OMERI11G11000.4 310 DQPECQFYMKTGDCKFGAVCKFHHPK 335
                      689*********************96 PP
5zf-CCCH38.42.1e-12355381127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OMERI11G11000.4 355 PGEPICTFYSRYGICKFGPNCKFDHPM 381
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-45582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8685583IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-85881IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-56083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-46182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244100128IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6103129IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5106128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-6146174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619146174IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5146173IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4152172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511308336IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5308335IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5311336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4314335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6353380IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178354382IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9356381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4359379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAATIGP HVVDEEAMWQ MNLGEAMEAG PYPERIGEPD  60
CSYYMRTGLC RFGMTCKFNH PADRKMAVAA ARMKGEYPQR IGQPECQYYL KTGTCKFGAT  120
CKFHHPREKA AMATRVQLNA LGYPLRPNEK ECAYYLRTGQ CKFGSTCKFH HPQPSNTMVA  180
VRGSVYSPGQ SVTSPSQHTY PGAVTNWPLS RSASFIASPR WPGHSSYAQV IVPPGLVQVP  240
GWNPYAAQIG SSSSDDQQRT AGGAKYYTGS RHSETPNMGD QGMFSSYQAG SVPLGLYTVQ  300
RESIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERIIP TPNCALSSLG LPLRPGEPIC  360
TFYSRYGICK FGPNCKFDHP MGTVMYGLPT SPTGDVSARR MLAPVPAHSE VSPDNVSGRS  420
RRITHSDSQQ IPSGERGTER EAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0F5M70.0A0A0E0F5M7_9ORYZ; Uncharacterized protein
STRINGORUFI11G13960.10.0(Oryza rufipogon)
STRINGONIVA11G12740.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]