PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G11000.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 460aa MW: 49714 Da PI: 8.466 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.3 | 8.3e-11 | 75 | 98 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OMERI11G11000.3 75 EPDCSYYMRTGLCRFGMTCKFNHP 98 789********************8 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 120 | 144 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OMERI11G11000.3 120 QPECQYYLKTGTCKFGATCKFHHPR 144 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 166 | 190 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OMERI11G11000.3 166 EKECAYYLRTGQCKFGSTCKFHHPQ 190 679********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9.5e-13 | 327 | 352 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OMERI11G11000.3 327 DQPECQFYMKTGDCKFGAVCKFHHPK 352 689*********************96 PP | |||||||
5 | zf-CCCH | 38.3 | 2.1e-12 | 372 | 398 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OMERI11G11000.3 372 PGEPICTFYSRYGICKFGPNCKFDHPM 398 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-4 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.868 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 75 | 98 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 77 | 100 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 78 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 117 | 145 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-10 | 120 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 123 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-6 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 166 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 169 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 327 | 352 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 328 | 353 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 331 | 352 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 370 | 397 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 371 | 398 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 371 | 399 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 373 | 398 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 376 | 396 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MAAAPSAGGV GEGSSSSAAA AAAAAATIGP HVVDEGALCF GHSHNADMFY NVDTLSVMNL 60 GEAMEAGPYP ERIGEPDCSY YMRTGLCRFG MTCKFNHPAD RKMAVAAARM KGEYPQRIGQ 120 PECQYYLKTG TCKFGATCKF HHPREKAAMA TRVQLNALGY PLRPNEKECA YYLRTGQCKF 180 GSTCKFHHPQ PSNTMVAVRG SVYSPGQSVT SPSQHTYPGA VTNWPLSRSA SFIASPRWPG 240 HSSYAQVIVP PGLVQVPGWN PYAAQIGSSS SDDQQRTAGG AKYYTGSRHS ETPNMGDQGM 300 FSSYQAGSVP LGLYTVQRES IFPERPDQPE CQFYMKTGDC KFGAVCKFHH PKERIIPTPN 360 CALSSLGLPL RPGEPICTFY SRYGICKFGP NCKFDHPMGT VMYGLPTSPT GDVSARRMLA 420 PVPAHSEVSP DNVSGRSRRI THSDSQQIPS GERGTEREAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110345 | 0.0 | AK110345.1 Oryza sativa Japonica Group cDNA clone:002-164-G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617449.1 | 0.0 | zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0E0F5M6 | 0.0 | A0A0E0F5M6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI11G10690.2 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-153 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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