PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI11G11000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 515aa MW: 55386.4 Da PI: 8.2973 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.1 | 9.5e-11 | 130 | 153 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OMERI11G11000.2 130 EPDCSYYMRTGLCRFGMTCKFNHP 153 789********************8 PP | |||||||
2 | zf-CCCH | 38.6 | 1.8e-12 | 175 | 199 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OMERI11G11000.2 175 QPECQYYLKTGTCKFGATCKFHHPR 199 799********************96 PP | |||||||
3 | zf-CCCH | 36.3 | 9.1e-12 | 221 | 245 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OMERI11G11000.2 221 EKECAYYLRTGQCKFGSTCKFHHPQ 245 679********************97 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 382 | 407 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OMERI11G11000.2 382 DQPECQFYMKTGDCKFGAVCKFHHPK 407 689*********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.5e-12 | 427 | 453 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OMERI11G11000.2 427 PGEPICTFYSRYGICKFGPNCKFDHPM 453 5799*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-4 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.868 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 130 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 132 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 175 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-5 | 178 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 221 | 245 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 224 | 244 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 380 | 407 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 380 | 408 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 382 | 407 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 383 | 408 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 386 | 407 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 425 | 452 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 426 | 453 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 426 | 454 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 428 | 453 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 431 | 451 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MAAAPSAGGV GEGSSSSAAA AAAAAATIGP HVVDEGALCF GHSHNADMFY NVDTLSVKGG 60 RTELPPRVLE RHTDMGISFG AAREGLSAAA TAVAVAASVI GPHSSDEEAM WQMNLGEAME 120 AGPYPERIGE PDCSYYMRTG LCRFGMTCKF NHPADRKMAV AAARMKGEYP QRIGQPECQY 180 YLKTGTCKFG ATCKFHHPRE KAAMATRVQL NALGYPLRPN EKECAYYLRT GQCKFGSTCK 240 FHHPQPSNTM VAVRGSVYSP GQSVTSPSQH TYPGAVTNWP LSRSASFIAS PRWPGHSSYA 300 QVIVPPGLVQ VPGWNPYAAQ IGSSSSDDQQ RTAGGAKYYT GSRHSETPNM GDQGMFSSYQ 360 AGSVPLGLYT VQRESIFPER PDQPECQFYM KTGDCKFGAV CKFHHPKERI IPTPNCALSS 420 LGLPLRPGEP ICTFYSRYGI CKFGPNCKFD HPMGTVMYGL PTSPTGDVSA RRMLAPVPAH 480 SEVSPDNVSG RSRRITHSDS QQIPSGERGT EREAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX972148 | 0.0 | JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617448.2 | 0.0 | zinc finger CCCH domain-containing protein 63 isoform X2 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0E0F5M5 | 0.0 | A0A0E0F5M5_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI11G13960.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA11G12740.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-156 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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