PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G03240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 346aa    MW: 36063.2 Da    PI: 7.8613
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G03240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09123171149
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+++kk +
  OMERI11G03240.1 123 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNETMKKVA 171
                      89*******************************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-5121169No hitNo description
SMARTSM003386.4E-6123186IPR004827Basic-leucine zipper domain
PfamPF001705.8E-8123170IPR004827Basic-leucine zipper domain
CDDcd147021.74E-11128169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSDHSSSDGQ RQCRRRGVNV DVVELDAAMA LADMAGAAPG QPESSPPPHA TQEAAAVAKG  60
EQEDEAEMAS TRLSLELGKV GIQSSSPCSS SSSAGHPAMQ PAAAATAAPG YGPRPRHMLT  120
EAEKEAKRLR RVLANRESAR QTILRRQAIR DELARKVADL SSQNETMKKV AIRTIKKAAP  180
SFLYTAAPAG VAPVPYVWGS WPPCGPTGYE HGNPGGAAAA PQPPPLCLPP CAWYYPVVAD  240
PRVSSPPTST YPQPYQEQPT SSPGGGTAEE DTDDDPCSLT LAIDVDKRSA PGAGASAAGA  300
GQHASMSDRE KATAAAEARK RRKELTKLKQ LHGGGGSRPG GGGEHW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318323RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615785.11e-155uncharacterized protein LOC4349815
TrEMBLA0A0E0F2P70.0A0A0E0F2P7_9ORYZ; Uncharacterized protein
STRINGOMERI11G03140.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.14e-09bZIP family protein