PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G01520.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 263aa    MW: 29593.3 Da    PI: 6.8769
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G01520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.41.4e-18123187259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OMERI11G01520.1 123 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngksKLFNVDYYGQHTCR 187
                      8*************************9887889********988654222279*********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-22108187IPR003657WRKY domain
PROSITE profilePS5081114.665117164IPR003657WRKY domain
SuperFamilySSF1182901.14E-19118187IPR003657WRKY domain
SMARTSM007742.2E-28122188IPR003657WRKY domain
PfamPF031068.6E-22123187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKILESFGHS DCQAVINMIE HQKALMVELR GMVIPILPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TTNKLTNLVG GKRKGDKHSM DNHNLEKEAK ESVNKRRKNA EHTGSTVAQA  120
PHNDGHQWRK YGQKWISRAK HSRSYYRCAN SKVQGCPATK TVQQMDSSGN GKSKLFNVDY  180
YGQHTCRGDG IANPYVVDTA HHSMEPINQT ECNSPTPTLE HEAHEVQDER FENLCMVQNM  240
PEYLIDFELE RAFEFTVHTL SPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.10.0probable WRKY transcription factor 67
TrEMBLA0A0E0F1X30.0A0A0E0F1X3_9ORYZ; Uncharacterized protein
STRINGOMERI11G01530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-18WRKY DNA-binding protein 46