PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI10G13750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 35764.1 Da PI: 8.137 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR OMERI10G13750.1 19 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 72 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 15 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.894 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-15 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 19 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-10 | 20 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MVRRDRIEGV RQYNRSKVPR LRWTPDLHHC FVHAIHKLGG QHKATPKRVL QLMGVGGLTI 60 SHVKSHLQMY RNMRNDDLGM QGIQQMDDQE QTFAGGMQIW TDMQLQDHHH ECNGPYCRCH 120 SSSKHAKGSL LLLHHQQQQQ QLQRPNEMET RRAEASTQTG FLRSQGICER DVSSGLPVPA 180 AYYSYYTPMA HGAPPAAADG AGHDDPPRLL GLVVMTTTTR RGSREATPPP ENGAIRHARK 240 ARRTAAAEEE ERDSDGDGDE LSLSLTLDSG LSCRSSGGAG AYCCSEGSCN NGLISSPSST 300 TSLVAGGCSR RSTPAMLSSV VSLDLSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 20 | 74 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 1e-138 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876554.1 | 0.0 | uncharacterized protein LOC112936623 isoform X1 | ||||
TrEMBL | A0A0E0F0H7 | 0.0 | A0A0E0F0H7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G13730.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02060.1 | 6e-30 | G2-like family protein |