PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI10G06470.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 149aa MW: 16718.3 Da PI: 10.371 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.3 | 5.5e-18 | 35 | 149 | 1 | 108 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 +p+G+ F P+d el +k v+g+ +l++v+++++i++++P L+ + + +ee+ +yfFs+r+ +++ +++ ++r++k g+Wka+g + OMERI10G06470.2 35 MPVGCYFIPKDLELFAILRCKLVRGQLpGTLNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKagNKRWPTRVAKGGTWKASGGS 128 699************77666666666544445679*************84455555553569**9998766633667899************** PP NAM 90 kevlsk..kgelvglkktLvf 108 k v sk +g +vg k t+vf OMERI10G06470.2 129 KMVRSKkvGGIDVGQKLTMVF 149 ****99888889********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-22 | 29 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.387 | 35 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-8 | 36 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAEQPPEGSG GGNNYGKWKG KEKVVPEYGK NRHGMPVGCY FIPKDLELFA ILRCKLVRGQ 60 LPGTLNNVFE HIRILEFHPA LLHETYIGNE EDGYIYFFSR RQFATKAGNK RWPTRVAKGG 120 TWKASGGSKM VRSKKVGGID VGQKLTMVF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066107 | 2e-91 | AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence. | |||
GenBank | AK106772 | 2e-91 | AK106772.1 Oryza sativa Japonica Group cDNA clone:002-115-G01, full insert sequence. | |||
GenBank | AP003331 | 2e-91 | AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01. | |||
GenBank | AP014957 | 2e-91 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 2e-91 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 3e-86 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A0A0E0EXI7 | 1e-106 | A0A0E0EXI7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G06200.1 | 1e-105 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-07 | NAC family protein |