PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G05020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 383aa    MW: 43034.6 Da    PI: 4.549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G05020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM484e-153314110128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                      +deelv ++L+++ e+++l++ +v+  ++i  ++P++ +       + wy  Fs   ++ ++g+ +  + k+gyWk  g+ +  +  ++  vg+
  OMERI10G05020.1  33 SDEELV-RFLAERKESHSLPE-NVFVGMNISLIDPRNSE-------DIWYMnFSDDPQSPKNGEDAIIKSKTGYWKVVGTVRIPT--STVIVGM 115
                      69****.99***999999999.89***********9874.......5688626666666666777777999********966554..5899*** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      k tL  y+g+ap g++t Wvm+ey +
  OMERI10G05020.1 116 KVTLDHYEGQAPPGKRTGWVMNEYLV 141
                      ************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.39524162IPR003441NAC domain
SuperFamilySSF1019419.29E-2431162IPR003441NAC domain
PfamPF023658.6E-833139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSAEIGSIFS RTIMSSKVPG LALLNTSISK SWSDEELVRF LAERKESHSL PENVFVGMNI  60
SLIDPRNSED IWYMNFSDDP QSPKNGEDAI IKSKTGYWKV VGTVRIPTST VIVGMKVTLD  120
HYEGQAPPGK RTGWVMNEYL VEQNDEANLP QDYKNLCTIF FQGDDILNAG DKQICLNANV  180
PNERKEFYLQ YLAELEEQNA AWNNQAVSVN EQDVSSSKGL DGQKTSAADD QSVNHAPSRE  240
AYIELNDFLN SDSSASTSEY SSQRTMISEE YFDSDAFLRE IRNDHNTAEE EHTDSKFSIA  300
AASNSDCVVI SPPEQGFVNN LDNHATIAGD SPQKSVQNDK VDEHSRSMIL RHAILIRTGR  360
LNRFMPDLLI EHSQRRLQVL KQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726820.0AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614544.10.0protein ATAF2 isoform X1
TrEMBLA0A0E0EWX50.0A0A0E0EWX5_9ORYZ; Uncharacterized protein
STRINGONIVA10G06600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.13e-15NAC domain containing protein 53