PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G06770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 340aa    MW: 36619.6 Da    PI: 4.8092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G06770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1995148456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++t+eq++eLe+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  OMERI09G06770.1  95 KRRLTAEQVRELERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 148
                      4579*************98**********************************9 PP
2HD-ZIP_I/II120.96.4e-3994184291
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +krrl++eqv+ LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d++ L++a+d+l + +++L +++e+Lr+++
  OMERI09G06770.1  94 RKRRLTAEQVRELERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDCLRTAHDELLAGRAALAADNESLRSQV 184
                      8*****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1787152IPR009057Homeodomain-like
PROSITE profilePS5007117.42789150IPR001356Homeobox domain
SMARTSM003898.3E-1792154IPR001356Homeobox domain
CDDcd000861.68E-1694151No hitNo description
PfamPF000461.8E-1695148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-1999149IPR009057Homeodomain-like
PRINTSPR000313.8E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000313.8E-6130146IPR000047Helix-turn-helix motif
PfamPF021831.3E-10150192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCSMDYSGRL VFSSAGAAPP CSAAGAGCGQ MILFGGHGGF VGGSPVMEEA ELRRRRRKRP  60
FLTTTHDELE LQMEDLVDEL YGVDDQQGWS SSARKRRLTA EQVRELERSF EEEKRKLEPE  120
RKSELARRLG IAPRQVAVWF QNRRARWKTK QLELDFDCLR TAHDELLAGR AALAADNESL  180
RSQVILLTEK LQANGKSPSP SPSPAPAEQT TVPAAAHATT VLAAESAKSF QLEEGRRLYD  240
AAGSTTTTNG GGSSVAMPAA RVAAARTAIN DSPESYFAGA RSPPSSSDDD CGGGSDDDYP  300
SSSVLLPDAA LAGDAFEHAV AATVAADEEA PLNSWEWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159LRRRRRKRP
25258RRRRRKR
3142150RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378950.0CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610704.11e-177homeobox-leucine zipper protein HOX25
SwissprotA3BYC11e-158HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A0E0ERR00.0A0A0E0ERR0_9ORYZ; Uncharacterized protein
STRINGOMERI09G06510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-29homeobox 1