PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI09G03860.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 153aa MW: 17165.2 Da PI: 9.0017 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.2 | 9.6e-15 | 29 | 82 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rrk++NRe+ArrsR RK++ ++eL+ v +L+++N++L l+ +++ OMERI09G03860.2 29 EKKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLKNQNQQLSMALSLTTQNL 82 679****************************************98887766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-12 | 23 | 79 | No hit | No description |
SMART | SM00338 | 3.8E-16 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-11 | 29 | 77 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.542 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.0E-12 | 31 | 84 | No hit | No description |
CDD | cd14702 | 2.01E-15 | 32 | 80 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSSGTSSGSS QGTRSSRSED DLNLQAQMEK KRKRRKESNR ESARRSRMRK QQHLDELTSQ 60 VNQLKNQNQQ LSMALSLTTQ NLVAVQAQNS VLQTQEMELQ SRLCALTDIL MCMNNTSATP 120 TPTIPATTTS ACDIFGASSW NQPPIDLYQY QCF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | KKRKRR |
2 | 29 | 35 | KKRKRRK |
3 | 30 | 35 | KRKRRK |
4 | 31 | 36 | RKRRKE |
5 | 43 | 50 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064903 | 0.0 | AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence. | |||
GenBank | AK072360 | 0.0 | AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence. | |||
GenBank | AK098869 | 0.0 | AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence. | |||
GenBank | CT833039 | 0.0 | CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence. | |||
GenBank | CT833040 | 0.0 | CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612149.1 | 1e-108 | bZIP transcription factor 44 | ||||
TrEMBL | A0A0D3H4Y8 | 1e-107 | A0A0D3H4Y8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0B149 | 1e-107 | A0A0E0B149_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0EQK5 | 1e-107 | A0A0E0EQK5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PBZ4 | 1e-107 | I1PBZ4_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM09G05500.1 | 1e-108 | (Oryza glumipatula) | ||||
STRING | OMERI09G03530.1 | 1e-108 | (Oryza meridionalis) | ||||
STRING | ORGLA03G0189000.1 | 1e-108 | (Oryza glaberrima) | ||||
STRING | OBART09G04710.1 | 1e-108 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 1e-06 | basic leucine-zipper 44 |