PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI09G02760.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 475aa MW: 52179.1 Da PI: 8.3513

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI09G02760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.8	1.8e-11	189	217	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le OMERI09G02760.1 189 KTLRRLAQNREAARKSRLRKKAYIQQLES 217 6789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-6	185	247	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.2E-8	187	229	No hit	No description
PROSITE profile	PS50217	8.795	187	229	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.7E-9	189	218	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.13E-7	189	223	No hit	No description
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-27	274	346	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MGGSREEDRQ HHNHLPSELP LGFRSSSPTT MIASSSMSKE SSNYDMADFD QASLFLYLDS 60 HDQQSIQEQR QTLNIFPSQP MHVADPAYEA KSAGVAMAML PNGNQLQVLP SHPSKKPDQQ 120 GGQKIISSVP TNPPGPNLPL PNSAKDNNNS SLIKGPKKCG LQKEGSSSGK GATTSNDPER 180 EGRRTLDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLSQLEQQVH VARVQGAMLG 240 AGDQHQGLPS GPSAASLFDL EYGRWVEEHS KLIFQLRAAL NEQMADNQLQ VFVNGAMAQH 300 DELLSLKGAI ARADIFHLLC GVWATPAERC FLWLGGFRPS EAIKVMLKQV EPLSEGQLMS 360 IYELQQAAKG TEDGLSHAMD GLQQSLSDTV AAPDVAAAGG FMGHMSLAMN KISAMEDIVR 420 QADGLRQQTL HKLQHMLTIR QAARCFVAIS DYFHRLRALS TLWVARPRPE EGPAM

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MGGSREEDRQ HHNHLPSELP LGFRSSSPTT MIASSSMSKE SSNYDMADFD QASLFLYLDS  60
HDQQSIQEQR QTLNIFPSQP MHVADPAYEA KSAGVAMAML PNGNQLQVLP SHPSKKPDQQ  120
GGQKIISSVP TNPPGPNLPL PNSAKDNNNS SLIKGPKKCG LQKEGSSSGK GATTSNDPER  180
EGRRTLDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLSQLEQQVH VARVQGAMLG  240
AGDQHQGLPS GPSAASLFDL EYGRWVEEHS KLIFQLRAAL NEQMADNQLQ VFVNGAMAQH  300
DELLSLKGAI ARADIFHLLC GVWATPAERC FLWLGGFRPS EAIKVMLKQV EPLSEGQLMS  360
IYELQQAAKG TEDGLSHAMD GLQQSLSDTV AAPDVAAAGG FMGHMSLAMN KISAMEDIVR  420
QADGLRQQTL HKLQHMLTIR QAARCFVAIS DYFHRLRALS TLWVARPRPE EGPAM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106988	0.0	AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651202.1	0.0	transcription factor TGAL7 isoform X1
Swissprot	Q6H434	0.0	TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBL	A0A0E0EQ72	0.0	A0A0E0EQ72_9ORYZ; Uncharacterized protein
STRING	OMERI09G02570.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-125	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]